Distributed simulations and analysis of synchronous Boolean networks
SpecVar is a convenient tool for estimating interpretable genetic correlation of human complex traits and annotating the SNPs with context specific regulatory networks
In silico therapeutic target discovery using network attractors: avoiding pathological phenotypes
Finding paths of interest in networks
Correlation Guided Network Integration
Streaming over networks
Connecting nodes
Enhancing Boolean networks with continuous logical operators and edge tuning: smoothing simulations
This project combines Generative AI and Logic AI to form an integrated process, a pipeline, that retrieves large volumes of scientific information and produces logical models that can be validated and leveraged by human experts. Our goals are to organize and to analyze knowledge with the assistance of AI and other bio-information retrieval tools.
Mechanistic Inference of Node-Edge Relationships (MINER)
Code for 2023 "Measuring Robustness of the Gap Gene Network" paper
sRACIPE for bioconductor
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