sarek

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Daylily-Informatics / daylily-ephemeral-cluster

(current) A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.

Updated Aug 31, 2026
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STaiMIC / glassbox-ai-triage

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Reusable Nextflow subworkflow for auditable AI-assisted variant triage

genomics nextflow variant-calling reproducibility explainable-ai nf-core cancer-prediction auditability sarek glass-box-ai workflow-automation-ai

Updated Aug 3, 2026
Python

NaghmehRezaei / Sarekflow-somatic-NGS-platform

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Research-use full-stack platform for matched tumor–normal somatic variant calling with React, FastAPI, Celery, Nextflow, SLURM, Apptainer, nf-core/sarek, GATK Mutect2, MultiQC, and secure results delivery.

react docker bioinformatics genomics nextflow hpc ngs slurm multiqc mutect2 nf-core fastapi apptainer sarek somatic-variant-calling

Updated Jul 24, 2026
Python

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