DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
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Updated
Sep 10, 2025 - Python
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Sampler, Sequencer, Multi-engine synth and effects - in a box! [WIP]
Sampler, Sequencer, Multi-engine synth and effects - in a box! [WIP]
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Official code repository for GATK versions 4 and up
Official code repository for GATK versions 4 and up
Data intensive science for everyone.
Data intensive science for everyone.
SPAdes Genome Assembler
SPAdes Genome Assembler
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Analysis of single cell RNA-seq data course
Analysis of single cell RNA-seq data course
Simple & Efficient data access for Scala and Scala.js
Simple & Efficient data access for Scala and Scala.js
A repository for setting up a RNAseq workflow
A repository for setting up a RNAseq workflow
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