R package to access DoRothEA's regulons
Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or transcription factor responsive elements with manual sequence (IUPAC) or JASPAR API.
TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
Variational Auto Encoders for learning binding signatures of transcription factors
Identification and structural characterization of transcription factors based on supervised machine learning
Reprogram-Seq: Rational reprogramming of cellular states by combinatorial perturbation
Predicting the regulatory role of CRP transcription factor in Escherichia coli
R/bash/perl code for analysis and visualization
Anchor Residue Identification for any TF
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