This toolbox allows to simulate interactions between neural mass potentials (resonating at 40Hz) in the structural connectome. Here, a single brain region is seen as an oscillator whose dynamics is explained by a Stuart Landau Equation (Hopf Bifurcation including time delay).
(version 2018) Toolbox for estimation and interpretation of whole-brain linear effective connectivity
Assessing consciousness by perturbing a dynamic mean-field whole-brain model fitted to empirical neuroimaging data
Automatic annotation of cell identities in dense cellular images.
Maximum Spherical Mean Value for Shadow Reduction
Scripts to analyse "resting-state" and/or naturalistic viewing MEG data
Scripts to calculate InterSite Phase Clustering (ISPC) over time for the paper "Action experience in infancy predicts visual-motor functional connectivity during action anticipation". The scripts include ways of calculating whole-brain connectivity and connectivity between specific clusters or electrodes. The scripts also show examples of how to…
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