* README.md change short description of climada

* cosmetics

* markdown linting

…-parameter

Shift cyclostrophic argument to model_kwargs in from_tracks

Co-authored-by: Emanuel Schmid <[email protected]>

Checks in readers/writers to enforce correct types for `event_name` and `event_id` container and elements

* pydoc: fix bullet points and indentation

…_tutorial

Updates to impact yearset module and review of tutorial

* add bounds

* update CHANGELOG

* modify NA

* modify NI

* make basin a data class, add function to split by basin

* convert data cls to enum cls

* add test and fix pylits

* rename enum class

* implement Emanuel method and add origin arg

* add docstrings, return TCTtracks, move basin GDF

* update changelog

* Update climada/hazard/tc_tracks.py

Co-authored-by: Chahan M. Kropf <[email protected]>

* Update CHANGELOG.md

Co-authored-by: Chahan M. Kropf <[email protected]>

* Update climada/hazard/tc_tracks.py

Co-authored-by: Chahan M. Kropf <[email protected]>

* Update climada/hazard/tc_tracks.py

Co-authored-by: Chahan M. Kropf <[email protected]>

* Update climada/hazard/tc_tracks.py

Co-authored-by: Chahan M. Kropf <[email protected]>

* update test and fix lon format bug

---------

Co-authored-by: Chahan M. Kropf <[email protected]>

Feature/density tracks

* Add function to test if lat and lon are in geographic coords

* Add test for geographic coords in dist_to_coast

* Add test for geographic coords in coord_on_land

* Switch branch feature/remove_implicite_use_crs to black format

* Extend allowed extent for geo coords

* Modify allowed extents in geo_coords check function to allow for bounds

* Include possible wrong lat lon extension in error message

* Add check for geo coords in get_country_code

* Add test for geocoords in convert_wgs_to_utm

* Update error message in coord_on_land

* Harmonize error messages

* Adapt test get_country_geometries_fail

* Check for geo coords in match_coordinates

* Add check for lat in get_gridcellarea

* Modify check geo coords function to please linter

* Add test for geo coords in calc of coriolis param

* Add tests for check_if_geo_coords function

* Incorporate suggestions from review 1

* Start adapating match_coordinates function to other crs

* Add handling of unit in match_centroids

* Rename deg to degrees

* Add function to infer unit of coordinates

* Use infer_unit_coords in match_centroids function

* Add tests for unit_infer and unit-adapted match_coordinates

* Make test_tack_land_params compliant with new requirement of geodetic coords

* Correct wrong is_geodetic crs attribute

* Add restriction for haversine with non-degree units

* Finish adding test for handling of different units

* Add test invalid unit for match coords and docstrings

* Update docstrings

* Try to fix new linter issues

* Correct error in logger warning

* Force check_antimeridian to False in distance euclidean if unit is not degree

* Remove outdated test for raise of ValueError when check_antimeridian is attempted in non-degree units

* Add function to get coordinates from axis of coordinates'crs

* Update unit names to be consistent with epsg notation and remove unit kw from match_centroids

* Clarify docstring check_if_geo_coords

* Make conversion between radians and degrees more consistent

* Remove deprecated infer_unit_coords function

* Update tests

* Force input coords and centroids to have crs attribute in match_centroids

* Re-harmonize unit names and raise error when crs of centroids or coords is None

* Add missing tests

* Fix linter issues

* Refix linter

* Wrap valuerror raising in check_if_geo_coords

* Update tests

* Remove useless info in get_crs_unit docstring

* Raise separate exceptions for missing crs in coord_gdf and centroids

Co-authored-by: Chahan M. Kropf <[email protected]>

* Fix error in _nearest_neighbor_approx docstring

* Make clearer error message for  _nearest_neighbor with non-allowed units

* Simplify crs check in match_centroids

* Correct typo and update tests for new error messages in match_centroids

* Only warn for check_antimeridian when it is true and add tests

* Allow for units other than degree km and m by keeping distance threshold in the given unit

* Update thresholds in test to be consisten with handling of thresholds in non-degree units

* Remove mention to calling functions in error message in _nearest_neighbor_haversine

Co-authored-by: Chahan M. Kropf <[email protected]>

* Remove mention to calling functions in error message in _nearest_neighbor_approx

Co-authored-by: Chahan M. Kropf <[email protected]>

* Update docstrings match_centroids

* update docstrings for match_coordinates

* Update changelog

* Update docstring to removed grid centroids + black

* Add error to docstring and return value

* Replace default threshold by dynamic one and apply black

* Update tests to use dynamic threshold

* Simplify non degree crs handling

* Use crs instead of unit

* Update test to use crs as input

* Require explicit threshold for single centroid coordinates

* Add docstrings for km to degree and inverse

* Add docstrings for estimate threshold

* Update impact tests

* Add test for projected crs

* Add docstring in impact calc

* Update impact calc test to use correct distance threshold

* Add impact calc test with other crs

* Improve docstrings

* Separate check geo coordinates into two methods

* Improve docstrings

* Correct docstrings

* Add new coordinates methods to changelog

* Improve wording

* Fix resolution to be only positive

* Add coordinate checks for bounds

* Add test test resolution

* Add test assign other crs

* Update changelog

* Revert bounds and normalize degree check as test were broadly failing.

* Check that lon normalize values are actually proper longitudes

* Revert "Check that lon normalize values are actually proper longitudes"

This reverts commit 86bb4f5.

* Raise error if no res above min_threshold can be found in get_resolution_1d

* Add test exception exp.assign_centroids when crs not equal

* Add test get_unit_crs for undefined unit

* Add test unknown unit get_gridcell_area

* Add test estimate_matching_threshold

* check geocoords in lon_normalize and handle empty arrays in check geocoords

* Update tests lon_normalize

* Increase allowed lon extent in is_geo_coords to avoid failing tests with ibtracks

* Update offensive value for test_get_country_geometries_fail

* Add handling of nans in is_geo_coords

* Update changelog

* Update climada/engine/impact_calc.py

* Clarify meaning of highest resolution in docstrings

Co-authored-by: Chahan M. Kropf <[email protected]>

* Clarify meaning of highest resolution in docstrings

Co-authored-by: Chahan M. Kropf <[email protected]>

* Correct typo in docstring

Co-authored-by: Luca Severino <[email protected]>

* Fix typo in docstring

Co-authored-by: Luca Severino <[email protected]>

* Resolve linter issue

---------

Co-authored-by: luseverin <[email protected]>
Co-authored-by: luseverin <[email protected]>
Co-authored-by: Chahan Kropf <[email protected]>

…rial

Minor updates from data API tutorial review

Co-authored-by: Eliane Kobler 
Co-authored-by: emanuel-schmid

* Add target_grid option in LitPop.from_countries

* Update LitPop tests for target_grid argument

* Add target grid litpop

* Move target grid definition to from_countries()

* Remove unused function in test_litpop

* Update 15 arcsec grid definition and formatting

* Continue refactoring of litpop with target_grid argument

* Uncomment test litpop

* pylint

* pylint

* name arguments

* cosmetics

* name arguments correctly

* move target_grid default into from_shape

* fix some tests

* distribute parts of _define_target_grid to respective helper modules

* make test_from_shape_zurich_pass pass

* test_from_shape_zurich_pass: remove notes about changed excpectations

---------

Co-authored-by: emanuel-schmid <[email protected]>

…nto develop

* Allow metadata values to be set when reading Exposures from raster

* Fix linting

* Fix linting

* Update CHANGELOG.md

* Don't restrict Exposures.from_raster attrs parameter to metadata

Previously we only let the attrs parameter set Exposures metadata
attributes. We remove this restriction so that it can specify any
parameter in the Exposures.__init__ method.

---------

Co-authored-by: emanuel-schmid <[email protected]>

#1048)

* Initial draft for calibration from scipy.optimize

* Draft for impact function calibration

* Add first unit tests of calibration module

* ci: Add bayesian-optimization during Jenkins build

* Add __init__.py for util/calibarte/test module

* Add climada.util.calibrate.test module to test discovery

* Add unit and integration tests, update code base

* Start documenting new calibrate module

* Actually add the intregration test

* Add some documentation

* commit PLEASE CLEAN UP

* Add more docstrings and simplify imports through __init__

* Add separate Output classes for each optimizer

* Restructure calibration module

* Add tutorial on impact function calibration

* Update tutorial

* Remove hazard event selection from calibrate.Input

* Update calibration tutorial

* Update climada/util/calibrate/bayesian_optimizer.py

Use negative cost function as target function in BayesianOptimizer

Co-authored-by: Thomas Vogt <[email protected]>

* Separate computing cost from transforming impact objects

* Add evaluator for calibration output

* Add TestBayesianOptimizer test to test loader

* Update code, docs, and tutorial

* Update tutorial

* Add option to adjust data frame alignment

* add seaborn

* Add function to plot Impf variability of calibration (#791)

Co-authored-by: Schmid  Timo <[email protected]>
Co-authored-by: Lukas Riedel <[email protected]>

* Improve alignment and handling of NaNs

* Add seaborn to dependencies

* Split tests into multiple files, finish up

* Move impact transform and align to Input

* Use MultiIndex in parameter space dataframe

* Update tutorial

* Fix requirements for calibration module

Seaborn and bayes_opt

* Remove plot_impf_set function and improve exception type

* Add tests for OutputEvaluator

* Fix name of bayes_opt package on PyPI

* Make sure latest seaborn is installed on Jenkins

* Remove unused function definition

* Fix linter issues and remove unused code

* Add BayesianOptimizerOutputEvaluator

* Fix typo in tutorial

* Add GNU license header to new files

* Update CHANGELOG.md

* edit authors.md

* Fix a bug in parameter space plot

* Add ensemble calibrators

* Fix issue with constraints and allow_duplicate_points

* Fix bug in to_input_var

* Increment random seed and update output handling

* Make EnsembleOptimizer run in parallel

* Add docstring to EnsembleOptimizer.run

* Add suggestions from code review

* Rename 'true' parameter to 'data' in 'target_func' method.
* Remove setting random_state in run function during tests.
* Add explicit haz_type to tests to avoid warnings.

* Update cross-calibration module

* Add option to read and write EnsembleOptimizerOutput from/to HDF5.
* Add plotting functions for EnsembleOptimizerOutput.
* Streamline EnsembleOptimizer with generator methods.

* Add unit tests for cross calibration

Many tests still missing.

* Avoid errors when storing event names in cross calibration output

* Add iteration controller for BayesianOptimizer

* Fix calibrate module init and add first controller tests

* Deepcopy optimizer run kwargs and add hazard intensity histogram to shiny plot

* Fix handling of instance maximum for constrained optimization

* Add tests for BayesianOptimizerController and fix verbosity

* Add test for plotting parameter space

* Update integration tests for BayesianOptimizer

Include controller.

* Add explanation of BayesianOptimizerController to tutorial

* add preliminary plot_category function

* Add option to reduce tragedy ensemble size

* Add option to store and load calibration results

* Update plots and tutorial

* Fix annotations, docstrings, some linter issues

* Add tests for cross_calibrate.py

* Add test execution to test_cross_calibrate.py

* Update plots, tests, docstrings, docs

* Rename cross_calibrate.py to ensemble.py

* Improve plots, add 'replace' parameter to AverageEnsembleOptimizer

* Add ensemble calibration to tutorial

* Remove custom changes to Jenkins script

* Beautify plot

* Update calibation tutorial

* Use absolute imports for referring out of this module

* Update docs and links in tutorial

* Add `data_weights` to calibration Input

* Use weights for sampling with replacement in AverageEnsembleOptimizer.
* Update tests

* Add equality comparison to EnsembleOptimizerOutput

* Update CHANGELOG.md

* Update CHANGELOG.md

* Comply to abstractmethod interface in BayesianOptimizer

* Fix linter issue where builtin 'input' was shadowed

* Suggest that cost functions take ndarrays

* Update tutorial

* Make cost functions consume numpy arrays

* Update docs

* Update tutorial

* remove useless tqdm artefacts

* Update climada/util/calibrate/ensemble.py

Co-authored-by: Emanuel Schmid <[email protected]>

---------

Co-authored-by: emanuel-schmid <[email protected]>
Co-authored-by: Thomas Vogt <[email protected]>
Co-authored-by: Timo Schmid <[email protected]>
Co-authored-by: Schmid  Timo <[email protected]>
Co-authored-by: Emanuel Schmid <[email protected]>

* ci: Add job for Mamba installation
* ci: Import CLIMADA in bash and powershell
* ci: Run impact test when testing the installation