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Applied Probability Lecture 5: Tina Kapur Tkapur@ai - Mit.edu

The document summarizes an applied probability lecture that discusses Bayesian segmentation of MRI images. It provides the following information: - The lecture and lab will cover Bayesian segmentation of MRI images using MATLAB. Students will implement a medical image segmentation project on Monday and Tuesday. - Bayesian segmentation uses Bayes' rule to compute the posterior probability of image pixels belonging to different tissue classes (white matter, grey matter, CSF) given Gaussian density models from training data. - The mechanics of Bayesian segmentation involve creating class-conditional Gaussian models from manual segmentations, using uniform priors, and applying Bayes' rule to obtain posterior probabilities and produce the final segmented image.

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Madhuri Roy
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56 views10 pages

Applied Probability Lecture 5: Tina Kapur Tkapur@ai - Mit.edu

The document summarizes an applied probability lecture that discusses Bayesian segmentation of MRI images. It provides the following information: - The lecture and lab will cover Bayesian segmentation of MRI images using MATLAB. Students will implement a medical image segmentation project on Monday and Tuesday. - Bayesian segmentation uses Bayes' rule to compute the posterior probability of image pixels belonging to different tissue classes (white matter, grey matter, CSF) given Gaussian density models from training data. - The mechanics of Bayesian segmentation involve creating class-conditional Gaussian models from manual segmentations, using uniform priors, and applying Bayes' rule to obtain posterior probabilities and produce the final segmented image.

Uploaded by

Madhuri Roy
Copyright
© © All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
Available Formats
Download as PDF, TXT or read online on Scribd
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Applied Probability Lecture 5

Tina Kapur
[email protected]

Review Timeline/Administrivia

Friday: vocabulary, Matlab


Monday: start medical segmentation project
Tuesday: complete project
Wednesday: 10am exam
Lecture: 10am-11am, Lab: 11am-12:30pm
Homework (matlab programs):
PS 4: due 10am Monday
PS 5(project): due 12:30pm Tuesday

Review Friday: Vocabulary

Random variable
Discrete vs. continuous random variable
PDF
Uniform PDF
Gaussian PDF
Bayes rule / Conditional probability
Marginal Probability

Gaussian PDF

P (x ) ?

1
2? ?

?
e

(x? ?)

2? 2

mean ?
var iance ?

Objective
Probabilistic Segmentation of MRI images.

Objective
Probabilistic Segmentation of MRI images.

Today and Tomorrow


Lecture: Bayesian Segmentation of MRI
Inputs and outputs
Mechanics

Lab/Recitation: Implementation using


Matlab.

Bayesian Segmentation of MRI:


Inputs and Outputs

Bayesian Segmentation of MRI:


Inputs and Outputs
Input: 256x256 MRI image

Bayesian Segmentation of MRI:


Inputs and Outputs
Input: 256x256 MRI image
Given knowledge base
# classes 3: WM (1), GM (2), CSF(3)
Training data (manual segmentations)

Bayesian Segmentation of MRI:


Inputs and Outputs
Input: 256x256 MRI image
Given knowledge base
# classes 3: WM (1), GM (2), CSF(3)
Training data (manual segmentations)

Output: segmented image with labels 1,2,3.

Bayes Rule for Segmentation


P ( A | B) ?

P ( B | A) P( A)
P( B)

Bayes Rule for Segmentation


P ( A | B) ?

P ( B | A) P( A)
P( B)

In MRI Segmentation:
P(? i | x) ?
?

P( x | ? i ) P( ? i )
P( x )

P( x | ? i ) P( ? i )
P( x | ? i ) P(? i )

?
i

where P(x) is the marginal probability of x :


P( x ) ?

P( x | ? i ) P( ? i )

Bayes Rule for Segmentation


P ( A | B) ?

P ( B | A) P( A)
P( B)

In MRI Segmentation:
P(? i | x) ?
?

P( x | ? i ) P( ? i )
P( x )

P( x | ? i ) P( ? i )
P( x | ? i ) P(? i )

?
i

where P(x) is the marginal probability of x :


P( x ) ?

P( x | ? i ) P( ? i )

What is P(x|? ???P?? ???P(? ??x???

Bayesian Segmentation of MRI:


Mechanics
Create class-conditional Gaussian density
models from training data

Bayesian Segmentation of MRI:


Mechanics
Create class-conditional Gaussian density
models from training data
Use Uniform priors on the classes

Bayesian Segmentation of MRI:


Mechanics
Create class-conditional Gaussian density
models from training data
Use Uniform priors on the classes
Use Bayes rule to compute Posterior
probabilities for each class

Bayesian Segmentation of MRI:


Mechanics
Create class-conditional Gaussian density
models from training data
Use Uniform priors on the classes
Use Bayes rule to compute Posterior
probabilities for each class
Assign label of M-A-P class =>
segmentation

Recitation/Lab
Start MRI Segmentation Lab

10

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