Results
Survival Analysis - …
Welcome to ClinicoPath This tool will help you calculate median survivals and 1,3,5-yr survivals for a given fisk factor.
Explanatory variable should be categorical (ordinal or nominal). Select outcome level from Outcome variable. Outcome Level: if
patient is dead or event (recurrence) occured. You may also use advanced outcome options depending on your analysis type.
Survival time should be numeric and continuous. You may also use dates to calculate survival time in advanced elapsed time
options. This function uses survival, survminer, and finalfit packages. Please cite jamovi and the packages as given below. See
details for survival here.
Median Survival Summary and Table - race
When race is White, median survival is 60 [55 - 66, 95% CI] months.
When race is Black, median survival is 100 [65 - 140, 95% CI] months.
When race is Hispanic, median survival is 112 [86 - 130, 95% CI] months.
When race is Unknown Race, median survival is 69 [57 - 86, 95% CI] months.
Median Survival Table: Levels for race
95% Confidence Interval
Levels Records Events rmean se_rmean Median Lower Upper
race=White 4650 2635 111 1.80 60.0 55.0 66.0
race=Black 498 250 128 5.62 100.0 65.0 140.0
race=Hispanic 1045 462 135 4.14 112.0 86.0 130.0
race=Unknown Race 478 232 117 6.18 69.0 57.0 86.0
Cox Regression Summary and Table - race
When race is Black, there is 0.82 (0.72-0.93, p=0.002) times risk than when race is White.
When race is Hispanic, there is 0.76 (0.69-0.84, p<0.001) times risk than when race is White.
When race is Unknown Race, there is 0.91 (0.79-1.04, p=0.151) times risk than when race is White.
Cox Table- race
Explanatory Levels all HR (Univariable)
race White 4650 (69.7) -
Black 498 (7.5) 0.82 (0.72-0.93, p=0.002)
Hispanic 1045 (15.7) 0.76 (0.69-0.84, p<0.001)
Unknown Race 478 (7.2) 0.91 (0.79-1.04, p=0.151)
Model Metrics: Number in dataframe = 6671, Number in model = 6671, Missing = 0, Number of events = 3579, Concordance
= 0.525 (SE = 0.004), R-squared = 0.006( Max possible = 1.000), Likelihood ratio test = 37.272 (df = 3, p = 0.000) [3]
1, 3, 5-yr Survival Summary and Table - race
When race=White, 12 month survival is 73.80% [72.532%-75.10%, 95% CI].
When race=White, 36 month survival is 57.74% [56.288%-59.23%, 95% CI].
When race=White, 60 month survival is 49.99% [48.487%-51.54%, 95% CI].
When race=Black, 12 month survival is 79.89% [76.408%-83.54%, 95% CI].
When race=Black, 36 month survival is 63.22% [58.960%-67.78%, 95% CI].
When race=Black, 60 month survival is 56.56% [52.119%-61.39%, 95% CI].
When race=Hispanic, 12 month survival is 79.01% [76.520%-81.58%, 95% CI].
When race=Hispanic, 36 month survival is 66.05% [63.070%-69.17%, 95% CI].
When race=Hispanic, 60 month survival is 59.14% [55.965%-62.48%, 95% CI].
When race=Unknown Race, 12 month survival is 78.04% [74.294%-81.97%, 95% CI].
When race=Unknown Race, 36 month survival is 60.86% [56.317%-65.76%, 95% CI].
When race=Unknown Race, 60 month survival is 53.30% [48.508%-58.56%, 95% CI].
1, 3, 5 year Survival - race
95% Confidence Interval
Levels time Number at Risk Number of Events Survival Lower Upper
race=White 12 3278 1188 73.8 % 72.5 % 75.1 %
race=White 36 2259 671 57.7 % 56.3 % 59.2 %
race=White 60 1727 284 50.0 % 48.5 % 51.5 %
race=Black 12 378 98 79.9 % 76.4 % 83.5 %
race=Black 36 269 74 63.2 % 59.0 % 67.8 %
race=Black 60 207 26 56.6 % 52.1 % 61.4 %
race=Hispanic 12 748 210 79.0 % 76.5 % 81.6 %
race=Hispanic 36 535 113 66.0 % 63.1 % 69.2 %
race=Hispanic 60 406 52 59.1 % 56.0 % 62.5 %
race=Unknown Race 12 336 99 78.0 % 74.3 % 82.0 %
race=Unknown Race 36 224 67 60.9 % 56.3 % 65.8 %
race=Unknown Race 60 152 24 53.3 % 48.5 % 58.6 %
Survival Plot - race
KMunicate-Style Plot - race
[4] [5]
[3] [6] [7] [8] [9] [10]
References
[1] The jamovi project (2022). jamovi. (Version 2.3) [Computer Software]. Retrieved from https://www.jamovi.org.
[2] R Core Team (2021). R: A Language and environment for statistical computing. (Version 4.1) [Computer software]. Retrieved
from https://cran.r-project.org. (R packages retrieved from MRAN snapshot 2022-01-01).
[3] Ewen Harrison and Tom Drake and Riinu Ots (2019). finalfit: Quickly Create Elegant Regression Results Tables and Plots when
Modelling. [R package]. Retrieved from https://CRAN.R-project.org/package=finalfit.
[4] Alessandro Gasparini (2020). KMunicate: KMunicate-Style Kaplan–Meier Plots. [R package]. Retrieved from https://CRAN.R-
project.org/package=KMunicate.
[5] Morris TP, Jarvis CI, Cragg W, et al (2019). Proposals on Kaplan–Meier plots in medical research and a survey of stakeholder
views: KMunicate. BMJ Open 2019;9:e030215.. link.
[6] Terry M Therneau, Thomas Lumley (2019). survival: Survival Analysis. [R package]. Retrieved from https://CRAN.R-
project.org/package=survival.
[7] Alboukadel Kassambara and Marcin Kosinski and Przemyslaw Biecek (2019). survminer: Drawing Survival Curves using
'ggplot2'. [R package]. Retrieved from https://CRAN.R-project.org/package=survminer.
[8] Emily C. Zabor (2022). Survival analysis in R: A detailed tutorial on conducting survival analyses in R, including an
introduction to the basics of survival analysis, landmark analyses and time-dependent covariates, competing risks, and a
selection of advanced topics.. [GitHub Repository]. Retrieved from https://github.com/zabore/tutorials. link.
[9] Joseph Rickert (2017). Survival Analysis with R. R Views, An R community blog edited by RStudio. link.
[10] Serdar Balci (2022). ClinicoPath jamovi Module doi:10.5281/zenodo.3997188. [R package]. Retrieved from
https://github.com/sbalci/ClinicoPathJamoviModule. link.
