Sample InterPro families and test how well they can be reconstructed via nf-core/proteinfamilies

Chaining HHSUITE_REFORMAT and HHSUITE_BUILDHHDB

pyfastx vs biopython

Python script that clips the gappy ends of an MSA file based on a gap threshold

A short list of Nextflow-related branch-lessons for beginners

PathWalks is a random walk based algorithm where a walker crosses a pathway-to-pathway network under the guidance of a disease-related map. The latter is a gene network that we construct by integra…

Multi-thread PathWalks based on number of input cores and total steps per walker.

From gene expression microarray data to Limma and curation of resulting Gene Lists.

Parses MicroArray Platform into a matrix of two columns: ID - GeneSymbol

Starting from a specific disease, the user is allowed to command random walkers to explore a multi level network of their own input choosing and are returned an edgelist with the walked edges and t…

This R script uses two files from a GEO dataset as inputs, the series matrix and the platform annotations files and returns a .csv file with the intitial series matrix columns as well as their resp…

This R script receives drug smiles per lines as an input and prints/returns the drug violations per drug/rule in a 2D matrix.

We create a graph using the free online databases DisGeNET and DGIdb. The user is able to execute the R code with one argument (disease name as found in the DisGeNET_xxxxxxxx.txt) in order to find …