Capturing the Biofuel Wellhead and Powerhouse: The Chloroplast and Mitochondrial Genomes of the Leguminous Feedstock Tree Pongamia pinnata
Figure 3
Map of the Pongamia mtDNA (425,718 bp).
The innermost circle indicates the locations of two sets of inverted repeats (IR1A and IR1B, 6,229 bp; IR2A and IR2B, 2,274 bp) and two sets of direct repeats (DR1A and DR1B, 13,319 bp; DR2A and DR2B, 3,919 bp). Furthermore, IR1B and DR2A share an overlap of 669 bp. Genes on the outside of the map are transcribed in a counter-clockwise direction and those on the inside clockwise. The graphs plotted between these circles represent the percentage synonymous (blue) and non-synonymous (red) divergence of each protein-coding gene, between Pongamia and V. radiata, and, Pongamia and L. japonicus. Genes underlined in red are pseudogenes.