Anselmoo · Anselmoo · Jan 30, 2023 · Jan 30, 2023
@@ -2,6 +2,3 @@ coverage:
   precision: 2
   round: up
   range: "90...100"
-
-ignore:
-  - "spectrafit/plugins/rixs_visualizer.py"
@@ -57,7 +57,7 @@ jobs:
       - name: Install library
         run: poetry install --no-interaction --with dev --all-extras
       - name: Test SpectraFit
-        run: poetry run pytest --diff-symbols --cov=./spectrafit -vv --cov-report=xml --plots
+        run: poetry run pytest
       - name: Codecov
         uses: codecov/codecov-action@v3
         with:

@@ -43,13 +43,13 @@ repos:
       - id: mypy
         additional_dependencies:
           [
-            types-toml==0.10.8,
-            types-PyYAML==6.0.11,
-            types-tabulate==0.8.11,
-            types-mock==4.0.15,
+            types-toml==0.10.8.1,
+            types-PyYAML==6.0.12.3,
+            types-tabulate==0.9.0.0,
+            types-mock==5.0.0.2,
             numpy==1.23.4,
             pydantic==1.10.1,
-            pytest==6.2.5,
+            pytest==7.1.3,
           ]
   - repo: https://github.com/pycqa/pydocstyle
     rev: 6.3.0

@@ -14,6 +14,7 @@ ignore=CVS
 # Add files or directories matching the regex patterns to the ignore-list. The
 # regex matches against paths and can be in Posix or Windows format.
 ignore-paths=^spectrafit/test/.*?,
+            ^spectrafit/api/test/.*?,
             ^spectrafit/plugins/test/.*?,
             ^spectrafit/utilities/test/.*?,
             ^tools/.*?,
@@ -41,7 +42,7 @@ load-plugins=
 
 # Use multiple processes to speed up Pylint. Specifying 0 will auto-detect the
 # number of processors available to use.
-jobs=1
+jobs=0
 
 # When enabled, pylint would attempt to guess common misconfiguration and emit
 # user-friendly hints instead of false-positive error messages.

@@ -39,6 +39,16 @@
 
 ::: spectrafit.plugins.pkl_visualizer
 
+### RIXS Converter for RIXS data
+
+::: spectrafit.plugins.rixs_converter
+
+On top of the `RIXSConverter` class, the `RIXSVisualizer` class is
+available to visualize the RIXS data and provide a method to take
+RIXS cuts.
+
+::: spectrafit.plugins.rixs_visualizer
+
 [1]: https://docs.python.org/3/tutorial/datastructures.html#dictionaries
 [2]: https://pandas.pydata.org/pandas-docs/stable/reference/api/pandas.DataFrame.html
 [3]: https://docs.python.org/3/library/abc.html#abc.ABC

@@ -30564,7 +30564,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3.10.8 ('.venv': poetry)",
+   "display_name": ".venv",
    "language": "python",
    "name": "python3"
   },
@@ -30578,12 +30578,12 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.8"
+   "version": "3.10.9 (main, Dec 21 2022, 15:55:14) [Clang 14.0.0 (clang-1400.0.29.202)]"
   },
   "orig_nbformat": 4,
   "vscode": {
    "interpreter": {
-    "hash": "49fa1ed9ffd610ea36efaf8272ecb29f95c7b551cdf207b5ecb886cc2cf87275"
+    "hash": "b199af289ce012bb6a24205fcd5edae736294423f0e29474acbaa2e2fdaf4f82"
    }
   }
  },

@@ -170,7 +170,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3.9.14 ('.venv': poetry)",
+   "display_name": ".venv",
    "language": "python",
    "name": "python3"
   },
@@ -184,12 +184,12 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.14"
+   "version": "3.10.9 (main, Dec 21 2022, 15:55:14) [Clang 14.0.0 (clang-1400.0.29.202)]"
   },
   "orig_nbformat": 4,
   "vscode": {
    "interpreter": {
-    "hash": "9b683c2dd857ecbf7076b18804342210473ae98d60576d11d9e2c1f885eb6512"
+    "hash": "b199af289ce012bb6a24205fcd5edae736294423f0e29474acbaa2e2fdaf4f82"
    }
   }
  },

@@ -12,7 +12,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 1,
+   "execution_count": 9,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -36,7 +36,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 5,
+   "execution_count": 10,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -54,7 +54,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 7,
+   "execution_count": 11,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -71,44 +71,22 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 4,
+   "execution_count": 12,
    "metadata": {},
-   "outputs": [
-    {
-     "data": {
-      "text/html": [
-       "\n",
-       "        <iframe\n",
-       "            width=\"100%\"\n",
-       "            height=\"650\"\n",
-       "            src=\"http://127.0.0.1:8050/\"\n",
-       "            frameborder=\"0\"\n",
-       "            allowfullscreen\n",
-       "            \n",
-       "        ></iframe>\n",
-       "        "
-      ],
-      "text/plain": [
-       "<IPython.lib.display.IFrame at 0x28cbf3ca0>"
-      ]
-     },
-     "metadata": {},
-     "output_type": "display_data"
-    }
-   ],
+   "outputs": [],
    "source": [
-    "_app.app_run()"
+    "# Has to be called before the app is run\n",
+    "# but is not started in example mode, because it will run forever\n",
+    "\n",
+    "# _app.app_run()"
    ]
   },
   {
    "cell_type": "markdown",
    "metadata": {},
-   "source": []
-  },
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": []
+   "source": [
+    "![_](https://github.com/Anselmoo/spectrafit/raw/main/docs/examples/images/Figure_9_4.png)"
+   ]
   }
  ],
  "metadata": {

@@ -64,8 +64,8 @@ plugins:
   - autorefs
   - section-index
   - mkdocs-jupyter:
-      ignore_h1_titles: True
-      include_source: True
+      ignore_h1_titles: true
+      include_source: true
       execute: true
   - literate-nav:
       nav_file: SUMMARY.md
@@ -173,7 +173,7 @@ nav:
       - Reporting: api/reporting_api.md
       - Tools: api/tools_api.md
       - Data Model: api/data_model_api.md
-      - Converters: api/converter_api.md
+      - Converters and Visualizer: api/converter_api.md
   - Support:
       - Contact: contact.md
       - License: license.md