Update continuous data flagging #549
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Added filter to exclude quality control samples from looking for cont. data
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R/ResultFlagsIndependent.R
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| if (length(noncont.data) >= 1) { | ||
| info_match <- noncont.data %>% | ||
| # remove quality control samples | ||
| dplyr::filter(!grepl("Quality Control", ActivityTypeCode)) %>% |
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There are a few ActivityTypeCode's that do not include "Quality Control" that are also QC samples. Could you reference the internal TADA package WQXActivityTypeRef here instead and keep only the results assigned by TADA as "Non_QC"?
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Yes - that is a better, more specific solution. I can make that change.
…sdatas-tadacontinuousdataflag
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Updated to filter using TADA.ActivityCode.Flag |
cristinamullin
approved these changes
Dec 5, 2024
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Added filter to exclude quality control samples from continuous data search. I have not been able to recreate the issue with all NAs in continuous flag column by using examples from previous test failures or random data sets.