Thanks to visit codestin.com
Credit goes to github.com

Skip to content

Update continuous data flagging #549

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
cristinamullin merged 3 commits into from
Dec 5, 2024
Merged

Update continuous data flagging #549

Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
4fff325
Update ResultFlagsIndependent.R
hillarymarler Nov 25, 2024
b057ee4
Update ResultFlagsIndependent.R
hillarymarler Dec 5, 2024
2206415
Merge branch 'develop' into 484-check-found-nas-in-tada_flagcontinuou…
hillarymarler Dec 5, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
13 changes: 11 additions & 2 deletions R/ResultFlagsIndependent.R
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -260,11 +260,20 @@ TADA_FlagContinuousData <- function(.data, clean = FALSE, flaggedonly = FALSE, t

# everything not YET in cont dataframe
noncont.data <- subset(.data, !.data$ResultIdentifier %in% cont.data$ResultIdentifier)

# import WQX Activity Type Ref
qc.ref <- utils::read.csv(system.file("extdata", "WQXActivityTypeRef.csv", package = "EPATADA")) %>%
dplyr::select(Code, TADA.ActivityType.Flag) %>%
dplyr::rename(ActivityTypeCode = Code) %>%
dplyr::distinct()

# if time field is not NA, find time difference between results

if (length(noncont.data) >= 1) {
info_match <- noncont.data %>%
# Add TADA.ActivityType.Flag
dplyr::left_join(qc.ref, by = "ActivityTypeCode") %>%
# remove quality control samples
dplyr::filter(TADA.ActivityType.Flag == "Non_QC") %>%
dplyr::group_by(
TADA.LatitudeMeasure, TADA.LongitudeMeasure,
OrganizationIdentifier, TADA.ComparableDataIdentifier,
Expand All @@ -291,7 +300,7 @@ TADA_FlagContinuousData <- function(.data, clean = FALSE, flaggedonly = FALSE, t
dplyr::filter(time_diff_lead <= time_difference |
time_diff_lag <= time_difference)

rm(info_match)
rm(info_match, qc.ref)

# if matches are identified change flag to continuous
noncont.data <- noncont.data %>%
Expand Down
Loading