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Merged
cristinamullin merged 5 commits into from
Oct 16, 2025
Merged

Maintenance branch #683

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72a6931
Update reference files
github-actions[bot] Oct 15, 2025
2d88818
Update example data
github-actions[bot] Oct 15, 2025
46aa6e8
Update reference files
github-actions[bot] Oct 16, 2025
371e274
Update example data
github-actions[bot] Oct 16, 2025
e851043
Merge branch 'develop' into maintenance-branch
jbousquin Oct 16, 2025
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Binary file modified data/Data_6Tribes_5y.rda
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30,524 changes: 15,262 additions & 15,262 deletions inst/extdata/ATTAINSParamUseEntityRef.csv
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46 changes: 23 additions & 23 deletions inst/extdata/WQXCharacteristicRef.csv
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Original file line number Diff line number Diff line change
Expand Up @@ -522,6 +522,27 @@
"(Z)-Octadec-9-enyl (5-(((2-(((perfluorooctyl)sulphonyl)methylamino)ethoxy)carbonyl)amino)-o-tolyl)carbamate","Accepted",""
"(Z,Z)-11,13-Hexadecadienal","Accepted",""
"({4-[(1,2,3,3,4,4,5,5,6,6,6-Undecafluorohex-1-en-1-yl)oxy]phenyl}methyl)phosphonic acid","Accepted",""
"*****RETIRED*4-Nonylphenol dodecaethoxylates","Accepted",""
"*****RETIRED*4-Nonylphenol heptadecaethoxylates","Accepted",""
"*****RETIRED*4-Nonylphenol heptaethoxylates","Accepted",""
"*****RETIRED*4-Nonylphenol hexadecaethoxylates","Accepted",""
"*****RETIRED*4-Nonylphenol hexaethoxylates","Accepted",""
"*****RETIRED*4-Nonylphenol nonaethoxylates","Accepted",""
"*****RETIRED*4-Nonylphenol octadecaethoxylates","Accepted",""
"*****RETIRED*4-Nonylphenol octaethoxylates","Accepted",""
"*****RETIRED*4-Nonylphenol pentadecaethoxylates","Accepted",""
"*****RETIRED*4-Nonylphenol pentaethoxylates","Accepted",""
"*****RETIRED*4-Nonylphenol tetradecaethoxylates","Accepted",""
"*****RETIRED*4-Nonylphenol tetraethoxylates","Accepted",""
"*****RETIRED*4-Nonylphenol tridecaethoxylates","Accepted",""
"*****RETIRED*4-Nonylphenol triethoxylates","Accepted",""
"*****RETIRED*4-Nonylphenol undecaethoxylates","Accepted",""
"*****RETIRED*4-Octylphenol monoethoxylates","Accepted",""
"*****RETIRED*Cyanides","Accepted",""
"*****RETIRED*Deiodo flubendiamide","Accepted",""
"*****RETIRED*Diethylstilbesterol glucuronide","Accepted",""
"*****RETIRED*Phyllodocida","Accepted",""
"*****RETIRED*Phyllodocidae","Accepted",""
".alpha.,.alpha.-Dimethylphenethylamine","Accepted",""
".alpha.,2,6-Trichlorotoluene","Accepted",""
".alpha.-1,2,3,4,5,6-Hexachlorocyclohexane-D6 or alpha-HCH D6","Accepted",""
Expand Down Expand Up @@ -8334,38 +8355,22 @@
"4-Nitrophenyl heptafluorobutanoate","Accepted",""
"4-Nitroquinoline 1-oxide","Accepted",""
"4-Nonylphenol decaethoxylate","Accepted",""
"4-Nonylphenol decaethoxylates","Accepted",""
"4-Nonylphenol dodecaethoxylate","Accepted",""
"4-Nonylphenol dodecaethoxylates","Accepted",""
"4-Nonylphenol heptadecaethoxylate","Accepted",""
"4-Nonylphenol heptadecaethoxylates","Accepted",""
"4-Nonylphenol heptaethoxylate","Accepted",""
"4-Nonylphenol heptaethoxylates","Accepted",""
"4-Nonylphenol hexadecaethoxylate","Accepted",""
"4-Nonylphenol hexadecaethoxylates","Accepted",""
"4-Nonylphenol hexaethoxylate","Accepted",""
"4-Nonylphenol hexaethoxylates","Accepted",""
"4-Nonylphenol monoethoxylates***retired***use Ethanol, 2-(4-nonylphenoxy)-","Deprecated",""
"4-Nonylphenol nonaethoxylate","Accepted",""
"4-Nonylphenol nonaethoxylates","Accepted",""
"4-Nonylphenol octadecaethoxylate","Accepted",""
"4-Nonylphenol octadecaethoxylates","Accepted",""
"4-Nonylphenol octaethoxylate","Accepted",""
"4-Nonylphenol octaethoxylates","Accepted",""
"4-Nonylphenol pentadecaethoxylate","Accepted",""
"4-Nonylphenol pentadecaethoxylates","Accepted",""
"4-Nonylphenol pentaethoxylate","Accepted",""
"4-Nonylphenol pentaethoxylates","Accepted",""
"4-Nonylphenol tetradecaethoxylate","Accepted",""
"4-Nonylphenol tetradecaethoxylates","Accepted",""
"4-Nonylphenol tetraethoxylate","Accepted",""
"4-Nonylphenol tetraethoxylates","Accepted",""
"4-Nonylphenol tridecaethoxylate","Accepted",""
"4-Nonylphenol tridecaethoxylates","Accepted",""
"4-Nonylphenol triethoxylate","Accepted",""
"4-Nonylphenol triethoxylates","Accepted",""
"4-Nonylphenol undecaethoxylate","Accepted",""
"4-Nonylphenol undecaethoxylates","Accepted",""
"4-Nonylphenols","Accepted",""
"4-Octylphenol decaethoxylate","Accepted",""
"4-Octylphenol diethoxylate","Accepted",""
Expand All @@ -8375,7 +8380,6 @@
"4-Octylphenol hexadecaethoxylate","Accepted",""
"4-Octylphenol hexaethoxylate","Accepted",""
"4-Octylphenol monoethoxylate","Accepted",""
"4-Octylphenol monoethoxylates","Accepted",""
"4-Octylphenol nonaethoxylate","Accepted",""
"4-Octylphenol octaethoxylate","Accepted",""
"4-Octylphenol pentadecaethoxylate","Accepted",""
Expand Down Expand Up @@ -12116,7 +12120,6 @@
"Cyanide + Thiocyanate","Accepted",""
"Cyanide, available","Accepted",""
"Cyanide, free","Accepted",""
"Cyanides","Accepted",""
"Cyanides amenable to chlorination (HCN & CN)","Accepted",""
"Cyano Habs- Benthic Mat (Y/N) (choice list)","Accepted",""
"Cyano Habs- Dead Wildlife (Y/N) (choice list)","Accepted",""
Expand Down Expand Up @@ -12506,7 +12509,6 @@
"Dehydrogenase","Accepted",""
"Dehydrogenase (corrected for carbon content)","Accepted",""
"Dehydronifedipine","Accepted",""
"Deiodo flubendiamide","Accepted",""
"Deisopropyl prometryn","Accepted",""
"Deisopropylhydroxyatrazine","Accepted",""
"Deisopropyliprodione","Accepted",""
Expand Down Expand Up @@ -12842,7 +12844,6 @@
"Diethylmethoxy(3,3,4,4,5,5,6,6,6-nonafluorohexyl)silane","Accepted",""
"Diethylmethoxy(3,3,4,4,5,5,6,6,7,7,7-undecafluoroheptyl)silane","Accepted",""
"Diethylmethoxy(3,3,4,4,5,5,6,6,7,7,8,8,8-tridecafluorooctyl)silane","Accepted",""
"Diethylstilbesterol glucuronide","Accepted",""
"Diethylstilbestrol","Accepted",""
"Diethylstilbestrol glucuronide","Accepted",""
"Diethylstilbestrol glucuronide (DES-GlcA)","Accepted",""
Expand Down Expand Up @@ -17765,6 +17766,7 @@
"Particle size, 5/16 inch (8.0mm)","Accepted",""
"Particle size, 50 mesh, (0.297 mm)","Accepted",""
"Particle size, <0.001 mm","Accepted",""
"Particle size, Hydrometer","Accepted",""
"Particle size, Hydrometer (.008 mm)","Accepted",""
"Particle size, Hydrometer (.011 mm)","Accepted",""
"Particle size, Hydrometer (.015 mm)","Accepted",""
Expand Down Expand Up @@ -18900,8 +18902,6 @@
"Phycoerythrin","Accepted",""
"Phycoerythrin (PE)","Accepted",""
"Phycoerythrin fluorescence (fPE)","Accepted",""
"Phyllodocida","Accepted",""
"Phyllodocidae","Accepted",""
"Phylloicus","Accepted",""
"Phylocentropus","Accepted",""
"Physical Substrate Habitat Alterations (Y/N) (choice list)","Accepted",""
Expand Down Expand Up @@ -19425,7 +19425,7 @@
"Progesterone-2,2,4,6,6,17a,21,21,21-d9","Accepted",""
"Progesterone-2,3,4-13C3","Accepted",""
"Progesterone-d9","Accepted",""
"Progestrone","Accepted",""
"Progestrone***retired***use Progesterone","Accepted",""
"Proglumide","Accepted",""
"Prohexadione calcium","Accepted",""
"Proline, 1-[(3,3,4,4,5,5,6,6,7,7,8,8,9,9,10,10,10-heptadecafluorodecyl)sulfonyl]-, lithium salt","Accepted",""
Expand Down
17 changes: 9 additions & 8 deletions inst/extdata/WQXProviderRef.csv
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Expand Up @@ -1258,7 +1258,7 @@
"TDECDOE_WQX","Tennessee Department Of Environment And Conservation","STORET"
"WIDNR_WQX","Wisconsin Department of Natural Resources","STORET"
"CSC_WQX","CSC (Computer Sciences Corporation)(Virginia)","STORET"
"WSSC","Water Sentinels Sierra Club (Epa Region 7)","STORET"
"0801417","Red Mountain Pass Zinc (US EPA Region 8)","STORET"
"BXA","Bronx River Alliance (Volunteer)","STORET"
"GNLK01_WQX","Match-e-be-nash-she-wish Band of Pottawatomi Indians of Michigan (Gun Lake)","STORET"
"MRC","Midlands Rivers Coalition (Volunteer)*","STORET"
Expand Down Expand Up @@ -1299,9 +1299,11 @@
"TDECWPC_WQX","Tennessee Department Of Environment And Conservation","STORET"
"UTOGM_WQX","Utah Division of Oil, Gas, and Mining","STORET"
"HBMI_WQX","Houlton Band of Maliseet Indians (Tribal)","STORET"
"1111REG1","US EPA Region 1","STORET"
"JMU_ISAT_WQX","James Madison University Integrated Science and Technology Department","STORET"
"NORMANDEAUASSOC","Normandeau Associates Inc. (Volunteer)*","STORET"
"21FLCHCO_WQX","CHARLOTTE COUNTY","STORET"
"ISLANDCOUNTYWA_WQX","Island County Washington Public Health - Natural Resources","STORET"
"OSU_NREM_WQX","Oklahoma State University Natural Resource Ecology and Management Department","STORET"
"SRMTAKNY_WQX","Saint Regis Mohawk Tribe (Tribal)","STORET"
"AQUINNAH_WQX","Wampanoag Tribe of Gay Head (Aquinnah) (Tribal)","STORET"
Expand Down Expand Up @@ -1332,7 +1334,6 @@
"SUMFS","Stockton University Marine Field Station","STORET"
"KWO","Kansas Water Office","STORET"
"HOHTRIBE_WQX","Hoh Tribe","STORET"
"COCHITIPUEBLO","Pueblo of Cochiti, New Mexico (Tribal)","STORET"
"TSWQC_WQX","Tri-State Water Quality Council","STORET"
"11FLKNMS_WQX","Florida Keys National Marine Sanctuary (Florida)","STORET"
"USACENWP_WQX","U.S. Army Corps of Engineers, Portland District","STORET"
Expand Down Expand Up @@ -1371,6 +1372,7 @@
"ERWSD","Eagle River Water and Sanitation District","STORET"
"SQUAXIN","Squaxin Island Tribe (Tribal)","STORET"
"EVR","EVR Operations Limited","STORET"
"COCHITIPUEBLO","Pueblo of Cochiti, New Mexico (Tribal)","STORET"
"WRWMG","Wallkill River Watershed Management Group (Volunteer)*","STORET"
"UMR","Univ of Missouri Rolla","STORET"
"SHOPAITR_WQX","Shoshone-Paiute Tribes of the Duck Valley Reservation, Nevada (Tribal)","STORET"
Expand Down Expand Up @@ -1403,8 +1405,8 @@
"IDEQ_CDAOFFICE_WQX","Idaho Department Of Environmental Quality","STORET"
"NIAMLARB1_WQX","OhioEPA","STORET"
"CBMI_WQX","Cabazon Band of Cahuilla Indians, California (Tribal)","STORET"
"21FLSJWM_WQX","St. Johns River Water Management District","STORET"
"KENAI_WQX","Kenai Watershed Forum (Volunteer)","STORET"
"CHNEPSCB","Charlotte Harbor National Estuaries Program (Florida)","STORET"
"21WVWQAS_WQX","West Virginia WV Division Of Environmental Protection, Office Of Water Resources","STORET"
"21SCGW_WQX","SC Dept. of Health Control","STORET"
"GPELC","GPELCNebraska","STORET"
Expand Down Expand Up @@ -1440,8 +1442,6 @@
"21FLCHDH_WQX","Charlotte County Department of Health","STORET"
"PGSTNATR_WQX","Port Gamble S'Klallam Tribe (Tribal)","STORET"
"ROBINSONRANCHERIAENVIRONMENTAL","Robinson Rancheria (Tribal)","STORET"
"21FLSJWM_WQX","St. Johns River Water Management District","STORET"
"KWMNDATA","Keystone Watershed Montioring Network (Pennsylvania)","STORET"
"LAJOLLA","La Jolla Band of Luiseno Indians, California (Tribal)","STORET"
"MDE_TMDL","TMDL Technical Development Program","STORET"
"CHEROKEE_WQX","Cherokee Nation (Tribal)","STORET"
Expand Down Expand Up @@ -1529,6 +1529,10 @@
"CHNEPCHP","Charlotte Harbor National Estuaries Program (Florida)","STORET"
"CHNEPPIS","Charlotte Harbor National Estuaries Program (Florida)","STORET"
"CHNEPEB","Charlotte Harbor National Estuaries Program (Florida)","STORET"
"IL_EPA","Illinois EPA","STORET"
"CHNEPSCB","Charlotte Harbor National Estuaries Program (Florida)","STORET"
"KWMNDATA","Keystone Watershed Montioring Network (Pennsylvania)","STORET"
"WSSC","Water Sentinels Sierra Club (Epa Region 7)","STORET"
"21FLMCGL","McGlynn Laboratories, Inc (Florida)","STORET"
"21FLSCCF","Sanibel Captiva Conservation Foundation (Florida)","STORET"
"HSGMN","High Springs Gap Groundwater Monitoring Network (Florida)","STORET"
Expand Down Expand Up @@ -1629,7 +1633,6 @@
"SDWRAP","SD Dept of Environmental & Natural Resources","STORET"
"21FLPBCH","Palm Beach County Environmental Resources Managemnt(Florida)","STORET"
"CHATFLD","Chatfield Reservoir (Colorado)","STORET"
"0801417","Red Mountain Pass Zinc (US EPA Region 8)","STORET"
"0800650","International Smelter (US EPA Region 8)","STORET"
"CHNEPTPR","Charlotte Harbor National Estuaries Program (Florida)","STORET"
"RITA6","Hurricane Rita Emergency Response Monitoring","STORET"
Expand Down Expand Up @@ -1684,8 +1687,6 @@
"0801505","French Gulch Superfund site (US EPA Region 8)","STORET"
"LEWWTP","Littleton/Englewood Wastewater Treatment Plant (Colorado)","STORET"
"21AS","American Samoa Environmental Protection Agency","STORET"
"1111REG1","US EPA Region 1","STORET"
"IL_EPA","Illinois EPA","STORET"
"21ARIZGW","Arizona Department of Environmental Quality","STORET"
"0834QB00","Cheyenne River","STORET"
"CHNEPCHW","Charlotte Harbor National Estuaries Program (Florida)","STORET"
Expand Down
6 changes: 3 additions & 3 deletions inst/extdata/WQXcharValRef.csv
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Expand Up @@ -35658,7 +35658,7 @@
"QAQC Characteristic Validation()",1253,"CharacteristicUnit","TOTAL SOLIDS","Accepted","SEDIMENT","% BY WT","% BY WT",0,57,1,0,"","5/10/2022 12:00:00 AM","Pass"
"QAQC Characteristic Validation()",1260,"CharacteristicUnit","TOTAL SUSPENDED SOLIDS","NonStandardized","WATER","%","%",0,81.75,1,0,"Use unit %RECOVERY to support national data consistency","5/10/2022 12:00:00 AM","NonStandardized"
"QAQC Characteristic Validation()",1261,"CharacteristicUnit","TOTAL SUSPENDED SOLIDS","NonStandardized","SEDIMENT","%","%",0,61.5,1,0,"Use unit %RECOVERY to support national data consistency","5/10/2022 12:00:00 AM","NonStandardized"
"QAQC Characteristic Validation()",1354,"CharacteristicUnit","PH","Rejected","WATER","0/00","NONE",0,14,1,0,"Unit has been retired, use NONE","11/6/2024 12:00:00 AM","Suspect"
"QAQC Characteristic Validation()",1354,"CharacteristicUnit","PH","NonStandardized","WATER","0/00","NONE",0,14,1,0,"Unit has been retired, use NONE","10/15/2025 12:07:29 PM","NonStandardized"
"QAQC Characteristic Validation()",1356,"CharacteristicUnit","2,2',3,4,4',5,5'-HEPTACHLOROBIPHENYL","NonStandardized","OTHER","%","%",0,69.75,1,0,"Use unit %RECOVERY to support national data consistency","5/10/2022 12:00:00 AM","NonStandardized"
"QAQC Characteristic Validation()",1417,"CharacteristicUnit","ORTHOPHOSPHATE","NonStandardized","WATER","%","%",0,7.5,1,0,"Use unit % BY WT or % RECOVERY to support national data consistency","5/10/2022 12:00:00 AM","NonStandardized"
"QAQC Characteristic Validation()",1423,"CharacteristicUnit","PHOSPHORUS","Accepted","SEDIMENT","% BY WT","% BY WT",0,100,1,0,"","5/10/2022 12:00:00 AM","Pass"
Expand Down Expand Up @@ -35833,7 +35833,7 @@
"QAQC Characteristic Validation()",29576,"CharacteristicUnit","TOTAL PHOSPHORUS, MIXED FORMS","Accepted","AIR","% RECOVERY","% RECOVERY",0,100,1,0,"","12/10/2021 5:17:34 PM","Pass"
"QAQC Characteristic Validation()",29577,"CharacteristicUnit","CANOPY COVER","Rejected","AIR","COUNT","COUNT",-999999,999999,1,0,"","5/15/2024 12:00:00 AM","Suspect"
"QAQC Characteristic Validation()",29578,"CharacteristicUnit","HARDNESS, CA, MG","Accepted","AIR","MEQ/L","MG/L",0,94,1,0,"","12/10/2021 5:17:34 PM","Pass"
"QAQC Characteristic Validation()",29579,"CharacteristicUnit","TOTAL NITROGEN, MIXED FORMS","Accepted","AIR","MEQ/L","MG/L",0,99999,1,0,"","12/10/2021 5:17:34 PM","Pass"
"QAQC Characteristic Validation()",29579,"CharacteristicUnit","TOTAL NITROGEN, MIXED FORMS","Rejected","AIR","MEQ/L","MEQ/L",NA,NA,NA,NA,"","10/15/2025 12:05:14 PM","Suspect"
"QAQC Characteristic Validation()",29580,"CharacteristicUnit","ASBESTOS","Accepted","AIR","MFL","MFL",0,99999,1,0,"","12/10/2021 5:17:34 PM","Pass"
"QAQC Characteristic Validation()",29581,"CharacteristicUnit","PHEOPHYTIN A","Accepted","AIR","MG/CM2","UG/CM2",0,0.369,1000,0,"","12/10/2021 5:17:34 PM","Pass"
"QAQC Characteristic Validation()",29582,"CharacteristicUnit",".ALPHA.-CHLORDENE","Accepted","AIR","MG/KG","UG/KG",0,99999,1000,0,"","12/10/2021 5:17:34 PM","Pass"
Expand Down Expand Up @@ -63814,7 +63814,7 @@
"QAQC Characteristic Validation()",68597,"CharacteristicUnit","CROSS-SECTION DEPTH","Rejected","WATER","NONE","NONE",-999999,999999,1,0,"_","5/15/2024 12:00:00 AM","Suspect"
"QAQC Characteristic Validation()",68601,"CharacteristicUnit","TOTAL SAMPLE AREA","Accepted","WATER","AC","M2",0,999999,4046.8564224,0,"_","10/2/2023 12:00:00 AM","Pass"
"QAQC Characteristic Validation()",68805,"CharacteristicUnit","CONCENTRATED SAMPLE VOLUME","Accepted","BIOLOGICAL","#/ML","#/100ML",0,99999,100,0,"_","9/2/2023 12:00:00 AM","Pass"
"QAQC Characteristic Validation()",68612,"CharacteristicUnit","TOTAL NITROGEN, MIXED FORMS","Rejected","WATER","MG N/L******","MG/L",0,4.52,1000,0,"_","1/1/2025 12:00:00 AM","Suspect"
"QAQC Characteristic Validation()",68612,"CharacteristicUnit","TOTAL NITROGEN, MIXED FORMS","NonStandardized","WATER","MG N/L******","MG/L",0,4.52,1000,0,"_","10/15/2025 12:06:42 PM","NonStandardized"
"QAQC Characteristic Validation()",68614,"CharacteristicUnit","TRANSPERMETHRIN","Accepted","WATER","% RECOVERY","% RECOVERY",0,100,1,0,"_","10/2/2023 12:00:00 AM","Pass"
"QAQC Characteristic Validation()",68615,"CharacteristicUnit","BENZENE, 1,2,4-TRIBROMO-5-(2,4-DIBROMOPHENOXY)-***RETIRED***USE BDE-099","Accepted","OTHER","PG","G",0,999999,1e-12,0,"_","9/2/2023 12:00:00 AM","Pass"
"QAQC Characteristic Validation()",68616,"CharacteristicUnit","TETRACHLORODIBENZOFURAN","Accepted","OTHER","UG/KG","UG/KG",0,4,1,0,"_","9/2/2023 12:00:00 AM","Pass"
Expand Down