Short scripts for converting genetic data between formats.

python I/O for eigenstrat/ancestrymap format

Website

HMM-based estimator for selection coefficients in both single and lattice populations from the paper "Estimating selection coefficients in spatially structured populations"

Scripts for analysing mutational spectrum

Drift, admixture and selection

IBD estimation from pseudo-haploid data

Local ancestry from pseudo-haploid data

Short scripts for converting genetic data between formats (python3)

Estimate archaic ancestry from 23andMe data

Nearest neighbour based phasing algorithm

Simulate chunks in a pedigree

Analysis scripts from the paper "Eight thousand years of natural selection in Europe".

Scripts for estimating the age of f2 variants from the paper "Demography and the age of rare variants"

.bashrc and other scripts

Analysis scripts from the paper "Differential confounding of rare and common variants in spatially structured populations"

Grid Genotype Simulator