What's Changed

• Emit valid SAM format outputs by @AndreaGuarracino in #9
• Fix: Expose minimum MEM length command option by @maxrossi91 in #8
• Feature: Add SAM output to moni mems by @maxrossi91 in #11

New Contributors

• @AndreaGuarracino made their first contribution in #9

Full Changelog: v0.2.1...v0.2.2

Fixes

• Revert to previous klib version to enable compile.
• Bugfix related to newscan.x and creation of SLP (#5) [@oma219]

Changes / enhancements

• Add -e option to include ref occurrence in MEMS output. (#6)

Full Changelog: v0.2.0...v0.2.1

Fixes

• Fix BigRePair executable folder in pipeline.
• Fix thresholds construction missing bitvector for single run character.

Changes / enhancements

• Add install feature in CMake file.
• Add CPack component to generate install files and .deb package.
• Add SARS-CoV2 example data, from EBI’s COVID-19 data portal.
• Exposed ksw2 configuration parameters.
• Removed dependency from psutil.
• Add seqidx to print SAM preamble and contig names.

Full Changelog: v0.1.0...v0.2.0