Thanks to visit codestin.com
Credit goes to github.com

Skip to content

readPaths is now input_paths #715

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
ewels merged 2 commits into from
Jul 30, 2020
Merged

readPaths is now input_paths #715

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
4b4354a
readPaths is now input_paths
phue Jul 30, 2020
fce6587
update CHANGELOG.md
phue Jul 30, 2020
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 2 additions & 0 deletions CHANGELOG.md
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,5 +1,7 @@
# nf-core/tools: Changelog

* Change `params.readPaths` -> `params.input_paths` in `test_full.config`

## [v1.10.1](https://github.com/nf-core/tools/releases/tag/1.10.1) - [2020-07-30]

Patch release to fix the automatic template synchronisation, which failed in the v1.10 release.
Expand Down
2 changes: 1 addition & 1 deletion nf_core/pipeline-template/{{cookiecutter.name_noslash}}/conf/test_full.config
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ params {
// TODO nf-core: Specify the paths to your full test data ( on nf-core/test-datasets or directly in repositories, e.g. SRA)
// TODO nf-core: Give any required params for the test so that command line flags are not needed
single_end = false
readPaths = [
input_paths = [
['Testdata', ['https://github.com/nf-core/test-datasets/raw/exoseq/testdata/Testdata_R1.tiny.fastq.gz', 'https://github.com/nf-core/test-datasets/raw/exoseq/testdata/Testdata_R2.tiny.fastq.gz']],
['SRR389222', ['https://github.com/nf-core/test-datasets/raw/methylseq/testdata/SRR389222_sub1.fastq.gz', 'https://github.com/nf-core/test-datasets/raw/methylseq/testdata/SRR389222_sub2.fastq.gz']]
]
Expand Down
2 changes: 1 addition & 1 deletion nf_core/pipeline-template/{{cookiecutter.name_noslash}}/docs/usage.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -80,7 +80,7 @@ You can also supply a run name to resume a specific run: `-resume [run-name]`. U

### `-c`

Specify the path to a specific config file (this is a core NextFlow command). See the [nf-core website documentation](https://nf-co.re/usage/configuration) for more information.
Specify the path to a specific config file (this is a core Nextflow command). See the [nf-core website documentation](https://nf-co.re/usage/configuration) for more information.

#### Custom resource requests

Expand Down