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Using contexts is safer because this way the working directory reset happens even if something unexpected happens between setting and resetting the working directory.

PR checklist

  • This comment contains a description of changes (with reason)
  • CHANGELOG.md is updated
  • If you've fixed a bug or added code that should be tested, add tests!
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codecov bot commented Sep 7, 2022

Codecov Report

Merging #1819 (9aa0d91) into dev (153300d) will not change coverage.
The diff coverage is n/a.

@@           Coverage Diff           @@
##              dev    #1819   +/-   ##
=======================================
  Coverage   69.25%   69.25%           
=======================================
  Files          59       59           
  Lines        7148     7148           
=======================================
  Hits         4950     4950           
  Misses       2198     2198           

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@fabianegli fabianegli changed the title change to the working directory in a context Use a context to temporarily change the working directory Sep 8, 2022
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LGTM

@fabianegli
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Tests are still missing.

@fabianegli fabianegli added the WIP Work in progress label Sep 11, 2022
@fabianegli fabianegli removed the WIP Work in progress label Sep 12, 2022
@fabianegli fabianegli merged commit 1bbc4f5 into nf-core:dev Sep 12, 2022
@fabianegli fabianegli deleted the use-context-when-changing-working-directory-in-tests branch September 12, 2022 09:43
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2 participants