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Fix rich-codex previews for subworkflows #2265

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mashehu merged 1 commit into from
Apr 28, 2023
Merged

Fix rich-codex previews for subworkflows #2265

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8 changes: 2 additions & 6 deletions README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -1183,11 +1183,9 @@ To help developers build new subworkflows, the `nf-core subworkflows create-test
After you have written a minimal Nextflow script to test your subworkflow in `/tests/subworkflow/<subworkflow_name>/main.nf`, this command will run the tests for you and create the `/tests/subworkflow/<tool>/<subtool>/test.yml` file.

<!-- RICH-CODEX
working_dir: tmp/subworkflows
working_dir: tmp/modules
extra_env:
PROFILE: 'conda'
before_command: >
echo "repository_type: modules" >> .nf-core.yml
-->

![`nf-core subworkflows create-test-yml bam_stats_samtools --no-prompts --force`](docs/images/nf-core-subworkflows-create-test.svg)
Expand All @@ -1199,12 +1197,10 @@ To run unit tests of a subworkflow that you have installed or the test created b
You can specify the subworkflow name in the form TOOL/SUBTOOL in command line or provide it later by prompts.

<!-- RICH-CODEX
working_dir: tmp/subworkflows
working_dir: tmp/modules
timeout: 30
extra_env:
PROFILE: 'conda'
before_command: >
echo "repository_type: pipeline" >> .nf-core.yml
-->

![`nf-core subworkflows test bam_rseqc --no-prompts`](docs/images/nf-core-subworkflows-test.svg)
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