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Download: Fix unintentional downloading of containers in test #2434

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Merged
mirpedrol merged 2 commits into from
Sep 23, 2023
Merged

Download: Fix unintentional downloading of containers in test #2434

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535e7f9
Mock DownloadWorkflow.get_singularity_images() to prevent actual cont…
MatthiasZepper Sep 22, 2023
7592320
Update Changelog
MatthiasZepper Sep 22, 2023
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -20,6 +20,7 @@

- Improved container image resolution and prioritization of http downloads over Docker URIs ([#2364](https://github.com/nf-core/tools/pull/2364)).
- Registries provided with `-l`/`--container-library` will be ignored for modules with explicit container registry specifications ([#2403](https://github.com/nf-core/tools/pull/2403)).
- Fix unintentional downloading of containers in test for the Tower download functionality. Bug reported by @adamrtalbot and @awgymer ([#2434](https://github.com/nf-core/tools/pull/2434)).

### Linting

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8 changes: 2 additions & 6 deletions tests/test_download.py
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Expand Up @@ -402,7 +402,8 @@ def test_download_workflow_with_success(self, tmp_dir, mock_download_image, mock
# Test Download for Tower
#
@with_temporary_folder
def test_download_workflow_for_tower(self, tmp_dir):
@mock.patch("nf_core.download.DownloadWorkflow.get_singularity_images")
def test_download_workflow_for_tower(self, tmp_dir, _):
download_obj = DownloadWorkflow(
pipeline="nf-core/rnaseq",
revision=("3.7", "3.9"),
Expand Down Expand Up @@ -451,11 +452,6 @@ def test_download_workflow_for_tower(self, tmp_dir):

# download_obj.download_workflow_tower(location=tmp_dir) will run container image detection for all requested revisions
assert isinstance(download_obj.containers, list) and len(download_obj.containers) == 33
# manually test container image detection for 3.7 revision only
download_obj.containers = [] # empty container list for the test
download_obj.workflow_repo.checkout(download_obj.wf_sha["3.7"])
download_obj.find_container_images(download_obj.workflow_repo.access())
assert len(download_obj.containers) == 30 # 30 containers for 3.7
assert (
"https://depot.galaxyproject.org/singularity/bbmap:38.93--he522d1c_0" in download_obj.containers
) # direct definition
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