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Refactor code in preparation of a future 'subworkflows patch' command #2482

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Merged
bjlang merged 8 commits into from
Oct 23, 2023
Merged

Refactor code in preparation of a future 'subworkflows patch' command #2482

bjlang merged 8 commits into from
Oct 23, 2023

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@bjlang bjlang commented Oct 18, 2023

PR checklist

  • This comment contains a description of changes (with reason)
  • CHANGELOG.md is updated
  • If you've fixed a bug or added code that should be tested, add tests!
  • Documentation in docs is updated

@bjlang bjlang changed the title Dev Refactor code in preparation of a future 'subworkflows patch' command Oct 18, 2023
@bjlang bjlang marked this pull request as ready for review October 18, 2023 10:37
@bjlang bjlang requested a review from mirpedrol October 18, 2023 10:44
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codecov bot commented Oct 20, 2023 •
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Codecov Report

Merging #2482 (bf77d88) into dev (3fddb70) will increase coverage by 0.04%.
The diff coverage is 79.81%.

@@            Coverage Diff             @@
##              dev    #2482      +/-   ##
==========================================
+ Coverage   70.53%   70.58%   +0.04%     
==========================================
  Files          87       88       +1     
  Lines        9456     9478      +22     
==========================================
+ Hits         6670     6690      +20     
- Misses       2786     2788       +2
Files Coverage Δ
nf_core/modules/patch.py 100.00% <100.00%> (+20.95%) ⬆️
nf_core/components/patch.py 79.04% <79.04%> (ø)

... and 7 files with indirect coverage changes

mirpedrol
mirpedrol approved these changes Oct 23, 2023
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LGTM! Remember to update the CHANGELOG.md before merging!

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bjlang commented Oct 23, 2023

@nf-core-bot fix linting

@bjlang bjlang merged commit 3475626 into nf-core:dev Oct 23, 2023
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