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apeltzer merged 5 commits into from
May 3, 2019
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Add nf-core citation #327

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Add nf-core citation
drpatelh May 2, 2019
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Change CHANGELOG
drpatelh May 2, 2019
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Changed Paolos name by Deed Poll
drpatelh May 3, 2019
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Add pre-print
drpatelh May 3, 2019
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I dont speak Italian
drpatelh May 3, 2019
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -8,6 +8,7 @@
#### Other
* Fix small typo in central readme of tools for future releases
* Switched to yaml.safe_load() to fix PyYAML warning that was thrown because of a possible [exploit](https://github.com/yaml/pyyaml/wiki/PyYAML-yaml.load(input)-Deprecation)
* Add `nf-core` citation

## v1.6

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5 changes: 5 additions & 0 deletions README.md
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Expand Up @@ -429,3 +429,8 @@ INFO: Updating version in Singularity
```

To change the required version of Nextflow instead of the pipeline version number, use the flag `--nextflow`.

## Citation

If you use `nf-core tools` in your work, please cite the `nf-core` preprint as follows:
Ewels PA, Peltzer A, Fillinger S, Alneberg JA, Patel H, Wilm A, Garcia MU, Di Tommaso P, Nahnsen S. **nf-core: Community curated bioinformatics pipelines**. *bioRxiv*. 2019. p. 610741. [doi: 10.1101/610741](https://www.biorxiv.org/content/10.1101/610741v1).
9 changes: 9 additions & 0 deletions nf_core/pipeline-template/{{cookiecutter.name_noslash}}/README.md
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Expand Up @@ -28,3 +28,12 @@ The {{ cookiecutter.name }} pipeline comes with documentation about the pipeline

## Credits
{{ cookiecutter.name }} was originally written by {{ cookiecutter.author }}.


## Citation

<!-- TODO nf-core: Add citation for pipeline after release. Uncomment lines below and add citation. -->
<!-- If you use {{ cookiecutter.name }} for your analysis, please cite it as follows: -->

You can cite the `nf-core` pre-print as follows:
Ewels PA, Peltzer A, Fillinger S, Alneberg JA, Patel H, Wilm A, Garcia MU, Di Tommaso P, Nahnsen S. **nf-core: Community curated bioinformatics pipelines**. *bioRxiv*. 2019. p. 610741. [doi: 10.1101/610741](https://www.biorxiv.org/content/10.1101/610741v1).