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add optional link to blogpost to sync PR #3852

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Merged
mashehu merged 7 commits into from
Oct 31, 2025
+11 −1
Merged

add optional link to blogpost to sync PR #3852

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034a243
add blobpost to sync
mashehu Oct 28, 2025
d7d19f6
[automated] Update CHANGELOG.md
nf-core-bot Oct 28, 2025
d2e2c13
make blogpost input required
mashehu Oct 28, 2025
1b1172c
be more specific with blog_post type checks
mashehu Oct 28, 2025
65e3bdd
Merge branch 'add-blogpost-to-sync' of github.com:mashehu/tools into …
mashehu Oct 28, 2025
b3a1569
Update .github/workflows/sync.yml
mirpedrol Oct 28, 2025
bcb61af
Merge branch 'dev' into add-blogpost-to-sync
mashehu Oct 31, 2025
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5 changes: 5 additions & 0 deletions .github/workflows/sync.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -20,6 +20,10 @@ on:
description: "Enable debug/verbose mode (true or false)"
type: boolean
default: false
blog_post:
description: "link to release blogpost"
type: string
required: true

# Cancel if a newer run is started
concurrency:
Expand Down Expand Up @@ -114,6 +118,7 @@ jobs:
--pull-request \
--username nf-core-bot \
--github-repository nf-core/${{ matrix.pipeline }}
--blogpost ${{inputs.blogpost}}

- name: Upload sync log file artifact
if: ${{ always() }}
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -4,6 +4,7 @@

### General

- add optional link to blogpost to sync PR ([#3852](https://github.com/nf-core/tools/pull/3852))
- update multiqc version to fix utils test ([#3853](https://github.com/nf-core/tools/pull/3853))

### Template
Expand Down
6 changes: 5 additions & 1 deletion nf_core/pipelines/sync.py
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Expand Up @@ -70,6 +70,7 @@ def __init__(
gh_username: str | None = None,
template_yaml_path: str | None = None,
force_pr: bool = False,
blog_post: str = "",
):
"""Initialise syncing object"""

Expand All @@ -92,6 +93,7 @@ def __init__(
self.gh_username = gh_username
self.gh_repo = gh_repo
self.pr_url = ""
self.blog_post = blog_post

self.config_yml_path, self.config_yml = nf_core.utils.load_tools_config(self.pipeline_dir)
assert self.config_yml_path is not None and self.config_yml is not None # mypy
Expand Down Expand Up @@ -377,7 +379,9 @@ def make_pull_request(self):
pr_title = f"Important! Template update for nf-core/tools v{nf_core.__version__}"
pr_body_text = (
"Version `{tag}` of [nf-core/tools](https://github.com/nf-core/tools) has just been released with updates to the nf-core template. "
"This automated pull-request attempts to apply the relevant updates to this pipeline.\n\n"
f"For more details, check out the blog post: {self.blog_post}\n\n"
if self.blog_post != ""
else ""
"Please make sure to merge this pull-request as soon as possible, "
f"resolving any merge conflicts in the `{self.merge_branch}` branch (or your own fork, if you prefer). "
"Once complete, make a new minor release of your pipeline.\n\n"
Expand Down