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devcontainer: downgrade to debian 12 and revert moby:false #3907

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Merged
mashehu merged 4 commits into from
Nov 18, 2025
Merged

devcontainer: downgrade to debian 12 and revert moby:false #3907

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dab39cb
downgrade to debian 12 and revert setting moby to false
mashehu Nov 18, 2025
7eacd23
[automated] Update CHANGELOG.md
nf-core-bot Nov 18, 2025
0ec70dd
Merge branch 'dev' into downgrade-debian
mashehu Nov 18, 2025
563053c
Update CHANGELOG.md
mashehu Nov 18, 2025
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4 changes: 2 additions & 2 deletions .devcontainer/build-devcontainer/Dockerfile
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
# devcontainers/miniconda image based on debian (bookworm)
# see tags and images: https://mcr.microsoft.com/en-us/artifact/mar/devcontainers/miniconda/tags
FROM mcr.microsoft.com/devcontainers/miniconda@sha256:19516babd35bccd1429591a255dd867b2c8c01606cc594a8a6fe5db03309ecf8 AS build
FROM mcr.microsoft.com/devcontainers/miniconda@sha256:8e262a2664fab1d53054738d3633338558a2078ce66d3abde55c130f0d5da94f AS build

# copy this repo at current revision
COPY . /root/nfcore-tools/
Expand All @@ -27,7 +27,7 @@ RUN apt-get update --quiet && \
rm -rf /var/lib/apt/lists/*

# Final stage to copy only the required files after installation
FROM mcr.microsoft.com/devcontainers/base:debian@sha256:2e826a6ae92e5744cc0a471a03b4411e64f6b7cc6af3adaecddad697f0018f10 AS final
FROM mcr.microsoft.com/devcontainers/base:2.0.2-debian12@sha256:23fa69fed758b7927c60061317d73baf7d66b9fca5c344e80bce3a940b229af0 AS final

# Copy only the conda environment and site-packages from build stage
COPY --from=build /opt/conda /opt/conda
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4 changes: 1 addition & 3 deletions .devcontainer/build-devcontainer/devcontainer.json
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Expand Up @@ -9,9 +9,7 @@
},

"features": {
"ghcr.io/devcontainers/features/docker-outside-of-docker:1.6.3": {
"moby": false
}
"ghcr.io/devcontainers/features/docker-outside-of-docker:1.6.3": {}
},

"remoteEnv": {
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -30,6 +30,7 @@
- Update pre-commit hook astral-sh/ruff-pre-commit to v0.14.5 ([#3900](https://github.com/nf-core/tools/pull/3900))
- devcontainer: Set `moby: false` to fix trixie builds ([#3904](https://github.com/nf-core/tools/pull/3904))
- Update actions/checkout digest to 93cb6ef ([#3906](https://github.com/nf-core/tools/pull/3906))
- devcontainer: downgrade to debian 12 and revert `moby:false` ([#3907](https://github.com/nf-core/tools/pull/3907))

### Template

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