Convert variants from VarDict/VarDictJava into VCF v4.2 format.

Fast approximate string searching

Time and group logs for GitHub actions

Common scala utilities

Walk a Qumulo filesystem, perform actions with highly parallelized python

Python language bindings for bwa

Code and files for the main nf-core website.

Stitch is a toolkit for analysis of chimeric reads in sequencing data

Creating plasmid maps inside ggplot.

a python bioinformatics framework

🧬 gget enables efficient querying of genomic reference databases

Amazon Web Services Operator Interface

Structural Variant Index

Quality of life improvements for Bioinformatics in Python.

Hidden Markov Model based Copy number caller

R extension library for rust designed to be familiar to R users.

Low Coverage Calling of Genotypes

Per-base per-nucleotide depth analysis

This repository is home to CALITAS, a CRISPR-Cas-aware ALigner for In silico off-TArget Search. CALITAS implements a customized gapped alignment of guide sequences to genomes and other reference se…

Coronavirus (SARS-Cov-2) sequencing analysis

📚 Relevant papers for CNV and SV approaches

Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment

Genomics Extension for SQLite

Snakemake with pytest example