FIX: set fast bias_iters parameter to 0 #472
Merged
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
mgxd
reviewed
Apr 30, 2025
Co-authored-by: Chris Markiewicz <[email protected]> Co-authored-by: Mathias Goncalves <[email protected]>
d4c2e76 to
75a8d24
Compare
effigies
reviewed
Apr 30, 2025
d1ac6db to
401cc22
Compare
effigies
added a commit
that referenced
this pull request
May 13, 2025
0.18.0 (May 08, 2025) New feature release in the 0.18.x series. This release patches the FSL FAST interface to disable bias field correction, which is redundant with N4 and can cause problems in some populations. * FIX: Respect label order in precomputed derivatives (#478) * FIX: Set FAST bias_iters parameter to 0 (#472) * ENH: Tag structural workflows (#476) * MNT: Update pinned environment, use conda-forge connectome-workbench (#468)
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
3 participants
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This adds a new fsl interface module, which contains a patch for nipype's fast interface. The nipype interface requires bias_iters to be
1 <= integer <= 10, but settingbias_iters=0is required to bypass bias field correction.The patched interface is dropped into the anatomical workflow and the parameters are accordingly updated.
closes #471