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fix: Respect label order in precomputed derivatives #478

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May 6, 2025
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fix: Respect label order in precomputed derivatives #478

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10 changes: 8 additions & 2 deletions src/smriprep/utils/bids.py
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Original file line number Diff line number Diff line change
Expand Up @@ -47,11 +47,17 @@ def collect_derivatives(derivatives_dir, subject_id, std_spaces, spec=None, patt
derivs_cache = {}
for key, qry in spec['baseline'].items():
qry['subject'] = subject_id
item = layout.get(return_type='filename', **qry)
item = layout.get(**qry)
if not item:
continue

derivs_cache[f't1w_{key}'] = item[0] if len(item) == 1 else item
# Respect label order in queries
if 'label' in qry:
item = sorted(item, key=lambda x: qry['label'].index(x.entities['label']))

paths = [item.path for item in item]

derivs_cache[f't1w_{key}'] = paths[0] if len(paths) == 1 else paths

transforms = derivs_cache.setdefault('transforms', {})
for _space in std_spaces:
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