workflow for estimating the fraction of tumour in cell-free DNA from sWGS

Trim and Align Pipeline

Toolkit for processing sequences in FASTA/Q formats

Unsupervised Feature Selection with Random Forests (UFSRF)

Microsatellite instability (MSI) detection for tumor only data.

Fragment End Integrated Analysis tool

A comprehensive cancer DNA/RNA analysis and reporting pipeline

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

Tinn-R Editor - GUI for R Language and Environment

QDNAseq.hg38: QDNAseq bin annotation for hg38

A modular bioinformatics pipeline offering a range of preprocessing options for cell-free DNA (cfDNA) analysis.

Workflow for preprocessing cfDNA samples.

cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis