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Add a vignette on normalisation methods

#37

· SPPearce opened

on Aug 31, 2025

Can the code for <code>selectQset</code> be moved into select.qseaSet?

#35

· SPPearce opened

on Aug 29, 2025

Are the <code>mesaPCA</code> and <code>mesaUMAP</code> classes actually even used anymore?

#34

· SPPearce opened

on Aug 29, 2025

Mapability should be renamed to mappability throughout

#33

· SPPearce opened

on Nov 28, 2024

The HMMcopy parameters (GC and mappability) are unclear

#22

· SPPearce opened

on Sep 6, 2024

<code>MeCap</code> is not mentioned as an available method in the help of the <code>makeQset</code> function.

#19

· SPPearce opened

on Aug 6, 2024

Change default shape for PCA/UMAP plotting functions to filled circle (21)

#12

· paddyharker1005 opened

on Mar 13, 2024

Remove <code>samples</code> from output of dimensionality reduction functions

#10

· Steven-M-Hill opened

on Mar 12, 2024

plotPCA fails if shape has an NA value but NAshape is not specified

#9

· SPPearce opened

on Mar 12, 2024

plotCorrelationMatrix should be swapped from pheatmap to ComplexHeatmap

#8

· SPPearce opened

on Mar 12, 2024

Create documentation for new object classes

#7

· Steven-M-Hill opened

on Mar 12, 2024