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dadrasarmin/README.md

πŸ’« About Me:

I am a Project Manager of the European Galaxy Team at the University of Freiburg, working as part of the EuroScienceGateway project.

My academic background is in evolutionary biology, with a PhD focused on the terrestrialization of land plants. I investigated gene expression patterns in land plants and their closest algal relatives, Zygnematophyceae, using co-expression network analysis.

I have a diverse programming background. I began with C++, building small projects to learn core concepts, and later expanded into Python for data analysisβ€”developing projects such as a chatroom and a simple multiplayer game. During my PhD, I primarily used R and Bash, leveraging Snakemake to orchestrate workflows on HPC servers and performing statistical analyses locally in R.

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πŸ’» Tech Stack:

Markdown LaTeX R Python Bash Script Anaconda Qt Adobe InDesign Adobe Photoshop Canva Affinity Designer Gimp Inkscape NumPy Matplotlib Pandas Plotly Scipy scikit-learn Git GitHub GitLab Docker Jira Confluence

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  1. enrichment_analysis_for_non_model_organism enrichment_analysis_for_non_model_organism Public

    In this repo, I explain how can we use clusterProfiler and Tidyverse to perform (GO or KEGG) enrichment analysis in R.

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  2. rnaseq_quantification_kallisto_pipeline rnaseq_quantification_kallisto_pipeline Public

    This it the pipeline I use frequently to perform QC, filtering and trimming, and quantification of raw RNA-Seq reads.

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  3. Response_to_a_gradient_of_environmental_cues_in_mesotaenium_endlicherianum Response_to_a_gradient_of_environmental_cues_in_mesotaenium_endlicherianum Public

    Forked from deVries-lab/Response_to_a_gradient_of_environmental_cues_in_mesotaenium_endlicherianum

    In this repository we deployed the codes we used to perform bioinformatic analyses for the paper "Response_to_a_gradient_of_environmental_cues_in_mesotaenium_endlicherianum"

    HTML 2

  4. high-throughput_blast high-throughput_blast Public

    Here, I explain how to parallelize sequence similarity search using blast (or anything similar), if you have access to HPC or a big computer.

    1 2

  5. minimal-chatroom minimal-chatroom Public

    My first project for the advanced programming course - a minimal chatroom that has server side and client side implemented in c++ and Qt framework

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  6. agar.io agar.io Public

    My second project for the advanced programming course - Agar.io is a game that has server side and client side implemented in c++ and Qt framework

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