Next generation MLST toolkit

Complete source code of https://mytime.io - a website to convert any time zone to your local time zone.

Multiple samples showing best practices in app and watch face development on Wear OS.

LINcode assignment tool for Klebsiella

Python script(s) for assigning allele codes under current PulseNet nomenclature system in BioNumerics but as a command-line executable without BioNumerics dependencies

QC cutoffs for different genomes.

Identify phage regions in bacterial genomes for masking purposes

An efficient CLI to extract sequences from the SRA

Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.

An easy-to-use program to assign O1 Vibrio cholerae genomes to canonical lineages using phylogenetic placement.

The Bacterial Meningitis Genome Analysis Platform, an analysis pipeline, ExpressJS API, and ReactJS webapp for the analysis and characterization of bacterial meningitis samples

Gotchas from the trenches of bioinformatics

MLSType from Enterobase Tool Kit

Subtyping of Francisella tularensis subtypes

Don’t Panic! Your Bacterial Genomics Handbook

Synteny and Rearrangement Identifier

A novel method for sequence similarity estimation

k-mers and the like

trapical: trapical rapidly aligns Pulsenet islolate core alleles

Antimicrobial Resistance Analysis

Genome browser and variant annotation

The Pathogenwatch MLST/cgMLST assignment tool