Bio-curation library for modelling cellular signalling

Free, high quality text-to-speech for your Obsidian notes, leveraging Microsoft Edge's Read Aloud API.

Project to control Spotify on Android from Garmin Edge 530.

Fast and automatic structural identifiability software for ODE systems

List of papers studying machine learning through the lens of category theory

Create parameter estimation problems for ODE models

The Citation File Format lets you provide citation metadata for software or datasets in plaintext files that are easy to read by both humans and machines.

Rule-based modeling for whole-cell models.

An open-source application for biological image analysis

🎈 Simple reactive notebooks for Julia

Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.

python Parameter EStimation TOolbox

PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology

Symbolic expressions, rewriting and simplification

Symbolic programming for the next generation of numerical software

Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.

An acausal modeling framework for automatically parallelized scientific machine learning (SciML) in Julia. A computer algebra system for integrated symbolics for physics-informed machine learning a…

Julia interface to the Systems Biology Markup Language (SBML) library