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19 results for source starred repositories
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Bio-curation library for modelling cellular signalling

Python 8 Updated May 20, 2020

Free, high quality text-to-speech for your Obsidian notes, leveraging Microsoft Edge's Read Aloud API.

TypeScript 226 18 Updated Sep 24, 2025

Project to control Spotify on Android from Garmin Edge 530.

Kotlin 22 1 Updated Jun 21, 2024

Fast and automatic structural identifiability software for ODE systems

Julia 125 22 Updated Oct 20, 2025

List of papers studying machine learning through the lens of category theory

Python 1,443 89 Updated Oct 3, 2025

Create parameter estimation problems for ODE models

Julia 65 8 Updated Nov 3, 2025
TeX 1 Updated Jan 25, 2023

The Citation File Format lets you provide citation metadata for software or datasets in plaintext files that are easy to read by both humans and machines.

Python 512 117 Updated Apr 7, 2025

Rule-based modeling for whole-cell models.

Python 10 3 Updated May 20, 2022

An open-source application for biological image analysis

Python 1,059 410 Updated Nov 3, 2025

🎈 Simple reactive notebooks for Julia

Julia 5,250 318 Updated Oct 24, 2025

Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.

C++ 22 4 Updated Feb 19, 2025

python Parameter EStimation TOolbox

Python 262 47 Updated Nov 3, 2025

PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology

60 12 Updated Oct 21, 2025

Symbolic expressions, rewriting and simplification

Julia 559 124 Updated Nov 3, 2025

Symbolic programming for the next generation of numerical software

Julia 1,468 174 Updated Nov 4, 2025

Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.

Julia 500 82 Updated Oct 27, 2025

An acausal modeling framework for automatically parallelized scientific machine learning (SciML) in Julia. A computer algebra system for integrated symbolics for physics-informed machine learning a…

Julia 1,563 233 Updated Nov 4, 2025

Julia interface to the Systems Biology Markup Language (SBML) library

Julia 30 12 Updated Sep 2, 2025