Wrapper scripts for TASSEL (Trait Analysis by aSSociation, Evolution and Linkage) and UNEAK (Universal Network Enabled Analysis Kit) v3.0 Genotyping by Sequencing (GBS) analysis pipelines and GBS statistics generation

Sequencing of unculturable plant pathogens

This is a shell-scripted bioinformatics pipeline to process NGS data into interpretable mutation and somatic variant calls and finally visualising them in IGV. It integrates industry-standard tools and supports automated execution.

Dockerized BWA (Burrow-Wheeler Aligner for short-read alignment)

1,674 S.cerevisiae genomics data

bash scripts used in the analysis of Illumina sequence data

Germline Variant Calling Pipeline built in Snakemake

Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.