This repository contains my end-of-degree project. I've implemented a simple version of three of the most known aligners like Bowtie, BWA and BWT-SM

Docker container for W2RAP based on CentOS

The second part of https://github.com/npanuhin/BIOCAD

Small GATK alignment and variant calling pipeline using python

msgen: R functions for interfacing with the Microsoft Genomics service on Azure.

The snakyVC pipeline is designed for efficiently and parallelly executing variant calling on next-generation sequencing (NGS) whole-genome datasets.

💧 Automate message sending with Ngl, delivering one message per second for efficient communication and education purposes.

BWA-based alignment of CRISPR gRNA spacer sequences

Wrapper scripts for TASSEL (Trait Analysis by aSSociation, Evolution and Linkage) and UNEAK (Universal Network Enabled Analysis Kit) v3.0 Genotyping by Sequencing (GBS) analysis pipelines and GBS statistics generation

A Snakemake pipeline for copy number variant calling without normal tissue samples

Sequencing of unculturable plant pathogens

Server-Side BWA MERN 2021

Bioinformatics pipeline for Illumina human exome variant calling using FastQC, Trimmomatic, BWA, Samtools, Bcftools, and SnpEff. Demonstrates a reproducible workflow for NGS data analysis. #bioinformatics #genomics #variant-calling #ngs #pipeline

Step-by-step approach in the analysis of Rainbow trout DNA from raw reads to population insights using fastqc, trimmomatic, bwa, vcftools, plink, and R.

Tech Stack: React, and Tailwind CSS

This is a shell-scripted bioinformatics pipeline to process NGS data into interpretable mutation and somatic variant calls and finally visualising them in IGV. It integrates industry-standard tools and supports automated execution.

Build Docker container for BWA and (optionally) convert to Apptainer/Singularity.

Bulk Rna-seq Analysis

Ini adalah project Server-Side dari kelas BWA MERN 2021

docker file for genomic tools