Single cell Nanopore sequencing data for Genotype and Phenotype

Parse Illumina sample sheets with Python

An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data

Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing

Demultiplexing and debarcoding tool designed for LR-Split-seq data.

🍸 Web-based database system for flow cell management (incl. REST API)

snakemake workflow for basecalling and demultiplexing of ONT sequencing data

Simple management of Illumina sequencing flowcells

High-performance dual barcode and primer demultiplexer for MinION sequenced reads, optimized for fungal DNA barcoding.

Anglerfish - Nanopore reads from Illumina libraries

Base-call error-filtering and read preprocessing pipeline for fastq libraries

Demultiplexing utility, companion to flowcelltool.

🍝 Digestiflow Demultiplexing Tool

⏩ Streamed and parallel demultiplexing of fastq files in python

Scripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics

DEmultiplexing MOnitoring Report Tool. DEMORT evaluates demultiplexed fastq files by computing various metrics.

A repository for generating de-multiplexing report for Illumina sequencing runs using Pyspark

Fast demultiplexing of Illumina FASTQ files using Python.

Tool for demultiplexing Illumina FASTQ reads when no index reads are available. Intended usage is a a recovery tool.

fdemux is a FASTA/FASTQ demultiplexer with support for (arbitrarily) fuzzy barcode matching, asymmetric barcoding, and parallel processing.