Code for processing FASTA files into batched, tokenized, and padded sequences, and training FlashAttention-based implementations of ESM-2
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Apr 4, 2025 - Python
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esm-2
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This paper has been published on Interdisciplinary Sciences: Computational Life Sciences.
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Mar 31, 2025 - Python
graph-convolutional-network graph-attention-network protein-language-model esm-1b esm-2 kolmogorov-arnold-networks esm-3 binding-sites-prediction
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Apr 26, 2025 - Jupyter Notebook
🧬 EmbedDiff: A modular machine learning pipeline combining ESM2 embeddings, latent diffusion, and transformer-based decoding for de novo protein design
machine-learning deep-learning computational-biology pytorch transformer protein-design protein-engineering diffusion-models alphafold denoising-diffusion protein-generation esmfold esm-2 embeddiff ml-for-protein-engineering
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Aug 28, 2025 - Jupyter Notebook
🧬 EmbedDiff: A modular machine learning pipeline combining ESM2 embeddings, latent diffusion, and transformer-based decoding for de novo protein design
machine-learning deep-learning protein-engineering protein-language-model large-language-models esm-2 embeddiff dayhoff
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Aug 31, 2025 - Python
ProteinFlex is a comprehensive platform for protein structure analysis and drug discovery, leveraging advanced AI and machine learning techniques. The platform combines state-of-the-art protein structure prediction with interactive visualization and sophisticated drug discovery tools.
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Apr 23, 2025 - Python
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