ImageJ is an open source Java image processing program inspired by NIH Image.
It runs on any computer with a Java 1.8 or later virtual machine.
Downloadable distributions are available for Windows, Mac OS X and Linux.
ImageJ has a strong, established user base, with thousands of plugins and macros for performing a wide variety of tasks.
Fiji is a “batteries-included” distribution of ImageJ, bundling many plugins which facilitate scientific image analysis.
ImageJ macros and plugins.
Documentation for flowtrace, simple visualization of biological fluid flows in MATLAB, Python, and ImageJ
The MRI workshop about ImageJ macro programming.
Image process framework to easily analyse fluorescent glioblastoma cells in pattern of neurons.
ImageJ/Fiji macro that crops any given image stack without having to load it into memory first.
Materials supporting the ImageJ/Fiji workshop at Harvard Medical School.
Calculates the colocalization of EVs.
An ImageJ plugin for intensity-based three-filter set (ratiometric) FRET 🔌
Prairie 2-Photon Microscopy Data Manager for recursive batch processing ans analysis with Fiji
Generate synthetic images of geometric shapes within ImageJ
Lung XRAY image proccesing Fiji script for XRAY image enhancements, lung segmentation, automatic measurement (skewness, kyrtosis, circularity etc.)
A short macro to generate an image with randomly positioned "fluorescent" single molecules
Java8 template for OpenFaaS that pulls Java modules from GitHub using JitPack.io
ImageJ plugin, Java and CuPy implementation of the mode filter and empirical null filter. The mode filter is an edge-preserving smoothing filter by taking the mode of the empirical density.
This software is a computer program whose purpose is to automatically track centrosomes in DIC movies, using the ImageJ plateform.