Structural variant and indel caller for mapped sequencing data
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Oct 11, 2025 - C++
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indels
Here are 7 public repositories matching this topic...
Strelka2 germline and somatic small variant caller
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Dec 29, 2021 - C++
Structural variation and indel detection by local assembly
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Sep 16, 2025 - C++
A method for variant graph genotyping based on exact alignment of k-mers
ngs bayesian-inference variant-calling indels gibbs-sampling structural-variation snvs dna-sequencing genotyping k-mers variant-graphs
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Apr 1, 2019 - C++
Fast and accurate single sample SNV caller
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May 2, 2018 - C++
gappy extracts splids (split-inducing indels) from multiple sequence alignments.
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Nov 30, 2018 - C++
Optimized Python and C++ implementations of INDELseek, a Perl tool for detecting complex genetic indels in NGS data, with performance improvements, validation, and benchmarking against other variant callers.
python c-plus-plus benchmark bam-files bioinformatics genomics perl computational-biology next-generation-sequencing variant-calling samtools indels sequence-alignment performance-optimization genomic-data-analysis vcf-files ram-monitoring variant-detection gatk4-haplotypecaller indelseek
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Nov 27, 2024 - C++
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