1.7.0 (October 20, 2021)

Full changelog: https://github.com/nipy/nipype/milestone/1.7.0?closed=1

  * FIX: Make ants.LaplacianThickness output_image a string, not file (nipy#3393)
  * FIX: coord for mrconvert (nipy#3369)
  * FIX: ``antsRegistration`` allows the ``restrict_deformation`` to be float  (nipy#3387)
  * FIX: Also allow `errno.EBUSY` during `emptydirs` on NFS  (nipy#3357)
  * FIX: Removed exists=True from MathsOutput (nipy#3385)
  * FIX: Extension not extensions, after pybids v0.9 (nipy#3380)
  * ENH: Add CAT12 SANLM denoising filter (nipy#3374)
  * ENH: Add expected steps for FreeSurfer 7 recon-all  (nipy#3389)
  * ENH: Stop printing false positive differences when logging cached nodes  (nipy#3376)
  * ENH: Add new flags to MRtrix/preprocess.py (DWI2Tensor, MRtransform)  (nipy#3365)
  * ENH: ``verbose`` input should not be hashed in ``ants.Registration`` (nipy#3377)
  * REF: Clean-up the BaseInterface ``run()`` function using context (nipy#3347)
  * DOC: Fix typo in README  (nipy#3386)
  * STY: Make private member name consistent with the rest of them (nipy#3346)
  * MNT: Simplify interface execution and better error handling of ``Node`` (nipy#3349)
  * MNT: Add user name and email to Docker to appease git/annex/datalad (nipy#3378)
  * CI: Update CircleCI machine image  (nipy#3391)

1.6.1 (June 16, 2021)

Bug-fix release in the 1.6.x series.

Full changelog: <https://github.com/nipy/nipype/milestone/1.6.1?closed=1

  * FIX: Set DistributedPluginBase.refidx type correctly (nipy#3340)
  * FIX: change fsl interface randomise --f_only to --fonly for nipy#3322 (nipy#3325)
  * FIX: BET raising "No image files match: ..." with very long file names (nipy#3309)
  * FIX: Update SmoothEstimateOutputSpec resels description (nipy#3316)
  * ENH: Adds interfaces for MRtrix utils shconv and sh2amp (nipy#3280)
  * ENH: Interface for R (nipy#3291)
  * ENH: Add CAT12 interfaces (nipy#3310)
  * ENH: AFNI 3dNetCorr as afni.NetCorr (nipy#3263)
  * ENH: Skip newline before Python call in batch submission to facilitate containerized runs (nipy#3297)
  * ENH: Add new dwifslpreproc interface for MRtrix3 (nipy#3278)
  * REF: Cache nodes in workflow to speed up construction, other optimizations (nipy#3331)
  * DOC: Fixed Developer Setup Link in install.rst (nipy#3330)
  * MNT: Blacklist Dipy 1.4.1 (nipy#3335)
  * MNT: Drop support for numpy < 1.15.3 (nipy#3284)
  * CI: Build docker images with Python 3.8 (nipy#3287)
  * CI: Drop Circle doc builds (nipy#3338)
  * CI: Drop Travis (nipy#3332)
  * CI: Build docker images with Python 3.8 (nipy#3287)
  * CI: Add specs and style checks (nipy#3321)
  * CI: Move from Travis to GitHub actions (nipy#3318)

1.6.0 (November 28, 2020)

New feature release in the 1.6.x series.

In addition to the usual bug fixes, significant reductions were made
in workflow startup costs.

  * FIX: Canonicalize environment dicts to strings in Windows (nipy#3267)
  * FIX: Purge deprecated exception content accesses (nipy#3272)
  * FIX: Handle changes in CLI structure of mrtrix3.DWIBiasCorrect (nipy#3248)
  * FIX: EpiReg changed to not list certain outputs when 'wmseg' input is specified (nipy#3265)
  * FIX: CI issues (nipy#3262)
  * FIX: SPM SliceTiming must accept either Int or float for ref_slice and sli… (nipy#3255)
  * FIX: Raise version error when using ``-g`` with ``antsAI`` < 2.3.0 (nipy#3256)
  * FIX: No longer depending on pydotplus (networkx >=2.0 update) (nipy#3251)
  * FIX: ANTs' utilities revision - bug fixes and add more operations to ``ants.ImageMath`` (nipy#3236)
  * ENH: Handle unavailable traits due to version differences (nipy#3273)
  * ENH: Optimize workflow.run performance (nipy#3260)
  * DOC: Remove myself (@mr-c) from the zenodo metadata (nipy#3271)

1.5.1 (August 16, 2020)

Bug-fix release in the 1.5.x series.

This release includes small updates to ANTs utilities that lie somewhere
between bug fixes and enhancements.

(`Full changelog <https://github.com/nipy/nipype/milestone/1.5.1?closed=1>`__)

  * FIX: Warn for min/max_ver traits when tool version can't be parsed (nipy#3241)
  * FIX: Serialize all interface arguments when exporting workflows (nipy#3240)
  * FIX: Permit identity transforms in list of transforms given to ants.ApplyTransforms (nipy#3237)
  * FIX: ANTs' utilities revision - bug fixes and add more operations to ``ants.ImageMath`` (nipy#3236)
  * DOC: Skip BIDSDataGrabber doctest if pybids is missing (nipy#3224)

1.5.0 (June 03, 2020)

New feature release in the 1.5.x series.

In this release, the example scripts have been split out into their own package:
`niflow-nipype1-examples <https://github.com/niflows/nipype1-examples>`__.

(`Full changelog <https://github.com/nipy/nipype/milestone/1.5.0?closed=1>`__)

  * FIX: volterra_expansion_order documentation error (nipy#3213)
  * FIX: BET incorrect output paths (nipy#3214)
  * FIX: Terminal output in ``report.rst`` spreads one line per character (nipy#3220)
  * FIX: Allow parsing freesurfer 7 version string (nipy#3216)
  * FIX: Use PackageInfo to get NiftyReg version (nipy#3194)
  * FIX: Partial rollback of N4BiasFieldCorrection (nipy#3188)
  * FIX: ANTs' tools maintenance overhaul (nipy#3180)
  * FIX: load_resultfile crashes if open resultsfile from crashed job (nipy#3182)
  * FIX: FSL model.py make multiple F-tests (nipy#3166)
  * ENH: Restore ants.legacy interfaces (nipy#3222)
  * ENH: Add ``"TruncateImageIntensity"`` operation to ``ants.utils.Image.Math`` (nipy#3210)
  * ENH: SPM NewSegment multi-channel segmentation (nipy#3162)
  * ENH: Add reverse-ordered transform lists to ants.Registration outputs (nipy#3192)
  * ENH: Improve workflow connect performance (nipy#3184)
  * ENH: Add ``ConstrainedSphericalDeconvolution`` interface to replace ``EstimateFOD`` for MRtrix3's ``dwi2fod`` (nipy#3176)
  * ENH: Detect values for EulerNumber interface (nipy#3173)
  * ENH: Remove examples from repository (nipy#3172)
  * TEST: Clean up tests (nipy#3195)
  * TEST: Mock terminal output before testing changing default value (nipy#3193)
  * REF: make invocations of python and pytest consistent with the one used/desired python (nipy#3208)
  * REF: Prefer math.gcd to hand-rolled Euclid's algorithm (nipy#3177)
  * REF: Removed all uses of numpy_mmap (nipy#3121)
  * DOC: Sphinx 3 compatibility (nipy#3206)
  * DOC: Update links, typos in contributing guide (nipy#3160)
  * DOC: Update SelectFiles docstring to match actual behavior (nipy#3041)
  * DOC: Updated .zenodo.json file (nipy#3167)
  * DOC: Update .zenodo.json (nipy#3165)
  * MNT: Permit recent nilearns (nipy#2841)
  * MNT: Test Python 3.8 (nipy#3154)
  * MNT: Restore ReadTheDocs (nipy#3207)
  * MNT: Update Zenodo ordering based on commit count (nipy#3169)

1.5.0-rc1

Release candidate for the new feature release in the 1.5.x series.

In this release, the example scripts have been split out into their own package:
`niflow-nipype1-examples <https://github.com/niflows/nipype1-examples>`__.

(`Full changelog <https://github.com/nipy/nipype/milestone/1.5.0?closed=1>`__)

  * FIX: Partial rollback of N4BiasFieldCorrection (nipy#3188)
  * FIX: ANTs' tools maintenance overhaul (nipy#3180)
  * FIX: load_resultfile crashes if open resultsfile from crashed job (nipy#3182)
  * FIX: FSL model.py make multiple F-tests (nipy#3166)
  * ENH: Improve workflow connect performance (nipy#3184)
  * ENH: Add ``ConstrainedSphericalDeconvolution`` interface to replace ``EstimateFOD`` for MRtrix3's ``dwi2fod`` (nipy#3176)
  * ENH: Detect values for EulerNumber interface (nipy#3173)
  * ENH: Remove examples from repository (nipy#3172)
  * REF: Prefer math.gcd to hand-rolled Euclid's algorithm (nipy#3177)
  * REF: Removed all uses of numpy_mmap (nipy#3121)
  * DOC: Update links, typos in contributing guide (nipy#3160)
  * DOC: Update SelectFiles docstring to match actual behavior (nipy#3041)
  * DOC: Updated .zenodo.json file (nipy#3167)
  * DOC: Update .zenodo.json (nipy#3165)
  * MNT: Update Zenodo ordering based on commit count (nipy#3169)

1.4.2 (February 14, 2020)

Full changelog: https://github.com/nipy/nipype/milestone/1.4.2?closed=1

* FIX: Allow ``fsl.MultipleRegressDesign`` to create multiple F-tests (nipy#3166)
* FIX: Reliably parse SGE job IDs in the presence of warnings (nipy#3168)
* FIX: Move TraitType import, handle API change for NoDefaultSpecified (nipy#3159)

1.4.1 (January 27, 2020)

Full changelog: https://github.com/nipy/nipype/milestone/1.4.1?closed=1

* FIX: DataSink to S3 buckets (nipy#3130)
* FIX: improve version checking for nodes of workflows (nipy#3152)
* FIX: mapnode to generate result file when crashes in single node mode (nipy#3143)
* FIX: Can't seem to import workflows from niflows in CircleCI (nipy#3134)
* FIX: Repair aftermath of docs refactor (nipy#3133)
* FIX: change ANTS number_of_time_steps from Float to Int (nipy#3118)
* DOC: Revise generation of examples to work in RTD (nipy#3132)
* DOC: Bring examples generation back to ``doc/conf.py`` (nipy#3131)
* DOC: Documentation overhaul (nipy#3124)
* DOC: Deep revision of documentation building (nipy#3120)
* DOC: Deduplicate code for Sphinx's APIdoc generation (nipy#3119)
* MNT: Update requirements.txt post-1.4 (nipy#3153)

1.3.2 (January 06, 2020)

Full changelog: https://github.com/nipy/nipype/milestone/36?closed=1

* FIX: Handle crashes of single-element iterables in MapNodes (nipy#3144)

1.4.0 (December 20, 2019)

Full changelog: https://github.com/nipy/nipype/milestone/37?closed=1

* FIX: Mark strings containing regex escapes as raw (nipy#3106)
* ENH: Pacify DeprecationWarnings caused by nibabel 3 pre-release (nipy#3099)
* ENH: Allow Nipype configuration directory to be specified with NIPYPE_CONFIG_DIR environment variable (nipy#3073)
* ENH: Add options and outputs to ``fsl.Eddy`` interface (nipy#3034)
* ENH: Add skull_file output to fsl.BET interface (nipy#3095)
* RF: Drop various remaining compatibilities for Python < 3.5 (nipy#2831)
* DOC: Add Python 2 statement to README, reference maintenance branch in CONTRIBUTING (nipy#3115)
* DOC: Miss underline before cmd in example code (nipy#3107)
* STY: Black (nipy#3096)
* MNT: Set junit_family to suppress pytest warning (nipy#3111)
* MNT: Fix Dorota Jarecka ORCID (nipy#3100)
* MNT: Drop Python 2 support (nipy#2654)