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@SACGF ACRF Cancer Genomics Facility

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    14 repositories

    • variantgrid

      Public
      VariantGrid public repo
      Python
      •
      Other
      •2•24•448•0•Updated Dec 22, 2025Dec 22, 2025

    • variantgrid_api

      Public
      Python
      •
      MIT License
      •1•0•3•0•Updated Oct 28, 2025Oct 28, 2025

    • cdot

      Public
      Transcript versions for HGVS libraries
      Python
      •
      MIT License
      •5•33•25•0•Updated Oct 24, 2025Oct 24, 2025

    • variantgrid_admin_docs

      Public
      Documentation for managing a Variantgrid server
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 29, 2025Aug 29, 2025

    • cdot_rest

      Public
      cdot REST server
      Python
      •
      MIT License
      •1•4•1•0•Updated Jul 29, 2025Jul 29, 2025

    • variantgrid_docs

      Public
      VariantGrid documentation
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jul 4, 2025Jul 4, 2025

    • hgvs

      Public
      HGVS variant name parsing and generation
      Python
      •
      MIT License
      •78•1•0•2•Updated May 7, 2025May 7, 2025

    • transect_web

      Public
      HTML
      •0•1•0•0•Updated Apr 23, 2025Apr 23, 2025

    • shariant_docs

      Public
      readthedocs for Shariant
      Shell
      •0•0•0•0•Updated Jul 9, 2024Jul 9, 2024

    • pyreference

      Public
      Python library for GFF / GTF reference files
      Python
      •
      MIT License
      •1•5•4•0•Updated Jul 10, 2023Jul 10, 2023

    • practical_week_9_github_repositories

      Public
      Shell
      •
      MIT License
      •10•0•0•0•Updated Oct 7, 2022Oct 7, 2022

    • uta_rest

      Public
      Python
      •
      MIT License
      •0•0•1•0•Updated Aug 12, 2022Aug 12, 2022

    • django-autocomplete-light

      Public
      A fresh approach to autocomplete implementations, specially for Django. Status: v3 stable, 2.x.x stable, 1.x.x deprecated. Please DO regularely ping us with your link at #yourlabs IRC channel
      Python
      •
      MIT License
      •469•0•0•0•Updated Feb 1, 2019Feb 1, 2019

    • bwa_gatk_freebayes-pipeline

      Public
      Pipeline for fastq | bam files which are aligned with BWA, deduplicated with GATK and variants called with GATK or freebayes
      Python
      •0•0•0•0•Updated Nov 30, 2018Nov 30, 2018