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@mgxd mgxd commented Feb 27, 2020

This is a proof of concept of #33

This requires a few changes to existing template descriptions:

  • Change ReferencesAndLinks type from list to dictionary to facilitate extraction
"ReferencesAndLinks": {
    "1": "https://doi.org/10.1093/cercor/bhr291",
    "2": "https://github.com/Washington-University/HCPpipelines/tree/master/global/templates"
  }
  • Standardizing HowToAcknowledge fields to include curly brackets with Reference IDs
"HowToAcknowledge": "Reference the following entries in ReferencesAndLinks: {1, 2}"

@mgxd mgxd requested a review from oesteban February 27, 2020 16:43
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oesteban commented Feb 27, 2020 via email

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codecov bot commented Feb 28, 2020

Codecov Report

Merging #35 into master will increase coverage by 17.55%.
The diff coverage is 81.81%.

Impacted file tree graph

@@             Coverage Diff             @@
##           master      #35       +/-   ##
===========================================
+ Coverage   67.88%   85.44%   +17.55%     
===========================================
  Files           5        5               
  Lines         137      158       +21     
===========================================
+ Hits           93      135       +42     
+ Misses         44       23       -21     
Flag Coverage Δ
#api 85.44% <81.81%> (+17.55%) ⬆️
#config 43.03% <0.00%> (?)
#datalad 73.41% <81.81%> (+22.32%) ⬆️
#dls3 48.73% <22.72%> (-4.56%) ⬇️
#s3 53.16% <22.72%> (-5.23%) ⬇️
Impacted Files Coverage Δ
templateflow/api.py 77.90% <81.81%> (+0.98%) ⬆️
templateflow/conf/bids.py 100.00% <0.00%> (+28.57%) ⬆️
templateflow/conf/__init__.py 92.72% <0.00%> (+41.81%) ⬆️

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mgxd commented Feb 28, 2020

Okay - this is ready for review

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This is a very solid starting point to nontrivial problem - thanks much!

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mgxd commented Mar 4, 2020

Once we drop 3.5 fully (#36), things should be working.

@mgxd mgxd force-pushed the enh/gen-citation branch from eb9bc3f to 93727c4 Compare March 4, 2020 18:43
@oesteban oesteban added this to the 20.0.0 milestone Apr 7, 2020
@oesteban oesteban force-pushed the master branch 2 times, most recently from bb078ec to b4d1290 Compare April 8, 2020 00:38
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mgxd commented Apr 9, 2020

@oesteban did the skeleton change between the last 2 commits?

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oesteban commented Apr 9, 2020

I was testing, so that's possible.

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oesteban commented Apr 9, 2020

I would get #39 merged first to avoid this kind of problems

@mgxd mgxd force-pushed the enh/gen-citation branch from 4e361f7 to 829f334 Compare April 9, 2020 19:41
@oesteban oesteban merged commit 3fea296 into templateflow:master Apr 9, 2020
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2 participants