List view

Don't lint pipeline name if <code>manifest.name</code> in <code>.nf-core.yml</code>

Status: Merged (completed).

nf-core/toolsnumber 2035

#2035 In nf-core/tools;

· by mirpedrol was closed on Nov 25, 2022

sort choices in prompts alphabetically

Status: Merged (completed).

nf-core/toolsnumber 2039

#2039 In nf-core/tools;

· by mashehu was closed on Nov 22, 2022

Check structure of update entry in .nf-core.yml

Status: Merged (completed).

nf-core/toolsnumber 2037

#2037 In nf-core/tools;

· by mirpedrol was closed on Nov 25, 2022

Fix subworkflows update command to work for non-nf-core repos

Status: Merged (completed).

nf-core/toolsnumber 2103

#2103 In nf-core/tools;

· by awgymer was closed on Dec 7, 2022

The rich codex screen grab updater is interfering with the development workflow

enhancement

Status: Closed (completed).

#1775 In nf-core/tools;

· by fabianegli was closed on Oct 15, 2022

Tooling now only works for modules/subwf under <code>nf-core</code>

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#1947 In nf-core/tools;

· by awgymer was closed on Nov 28, 2022

Lint linter config for Python &lt; 3.6 and issue warning if Actions are using Python 3.6 and older

bugSomething isn't workingSomething isn't working

high-priority

linting

Status: Closed (completed).

#1876 In nf-core/tools;

· by apeltzer was closed on Nov 30, 2022

Implement 'nf-core subworkflows list' command

enhancement

infrastructure

subworkflows

Status: Closed (completed).

#1888 In nf-core/tools;

· by drpatelh was closed on Nov 9, 2022

Implement 'nf-core subworkflows info' command

enhancement

infrastructure

subworkflows

Status: Closed (completed).

#1889 In nf-core/tools;

· by drpatelh was closed on Nov 17, 2022

Implement 'nf-core subworkflows update' command

enhancement

infrastructure

subworkflows

Status: Closed (completed).

#1892 In nf-core/tools;

· by drpatelh was closed on Nov 17, 2022

Implement 'nf-core subworkflows remove' command

enhancement

infrastructure

subworkflows

Status: Closed (completed).

#1886 In nf-core/tools;

· by drpatelh was closed on Nov 28, 2022

Indentation for module test.yml changed after v2.5.1 release

bugSomething isn't workingSomething isn't working

high-priority

Status: Closed (completed).

#1866 In nf-core/tools;

· by drpatelh was closed on Dec 2, 2022

Bump minimum required Nextflow version

templatenf-core pipeline/component templatenf-core pipeline/component template

Status: Closed (completed).

#1997 In nf-core/tools;

· by ewels was closed on Nov 18, 2022

Apostrophes in <code>nf-core create</code> descriptions break things

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#1989 In nf-core/tools;

· by ewels was closed on Nov 28, 2022

Add CHM13 igenomes to template

enhancement

Status: Closed (completed).

#1988 In nf-core/tools;

· by edmundmiller was closed on Sep 22, 2023

Prettier fails linting for default modules.json

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#2047 In nf-core/tools;

· by drpatelh was closed on Dec 5, 2022

installed_by field is not properly updated when updating a subworkflow

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#2065 In nf-core/tools;

· by maxulysse was closed on Dec 2, 2022

Module lint: Check container syntax

high-priority

linting

Status: Closed (completed).

#2084 In nf-core/tools;

· by ewels was closed on Dec 2, 2022

Go bug hunting for prettier pre-commit

high-priority

linting

Status: Closed (completed).

#2097 In nf-core/tools;

· by ewels was closed on Dec 7, 2022

Subworkflow install is not properly finding modules with "_"

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#2098 In nf-core/tools;

· by fmalmeida was closed on Dec 7, 2022

Phil broke it again

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#2102 In nf-core/tools;

· by ewels was closed on Dec 7, 2022