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ignored maps in params_used check #1062

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Merged
KevinMenden merged 2 commits into from
May 10, 2021
Merged

ignored maps in params_used check #1062

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35c9e3c
ignored maps in params_used check
KevinMenden May 10, 2021
7282681
added debug message
KevinMenden May 10, 2021
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6 changes: 6 additions & 0 deletions nf_core/lint/params_used.py
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Original file line number Diff line number Diff line change
@@ -1,6 +1,9 @@
#!/usr/bin/env python

import os
import logging

log = logging.getLogger(__name__)


def params_used(self):
Expand Down Expand Up @@ -28,6 +31,9 @@ def params_used(self):
if cf in ignore_params:
ignored.append("Config variable ignored: {}".format(self._wrap_quotes(cf)))
continue
if cf.count(".") > 1:
log.debug(f"Ignoring nested param: {cf}")
continue
if cf in main_nf:
passed.append("Config variable found in `main.nf`: {}".format(self._wrap_quotes(cf)))
else:
Expand Down