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Create, modify and analyse phylogenetic trees in R

Open Software for Teaching Evolutionary Biology at Multiple Scales Through Virtual Inquiries

R package: BALCONY (Better ALignment CONsensus analYsis)

Evolutionary genomics of chromosomal inversions in Atlantic herring

Analysis of simulated genotype alignment data for use in CNN estimators (Johnson and Wilke, 2022)

Carson, B. 2022. SLiM 3 outputs of in silico local adaptation with conditonally deleterious mutations and antagonistic pleiotropy in a two-deme model — Data publication on the FRDR: DOI: 10.20383/102.0526.

Shiny app visualizing the effects of carbonate stratigraphy on trait evolution

Code & data relevant for someone interested in conducting multivariate models using Bayesian statistics in #R #MCMCGlmm. In our analyses here, we use data on eastern grey kangaroo juvenile behaviour and survival and maternal behaviour.

A workshop covering common data wrangling & manipulation tasks in R

This directory contains code for the paper A phylogenomic framework for pelagiarian fishes (Acanthomorpha: Percomorpha) highlights mosaic radiation in the open ocean. If you want to run this code, I recommend downloading this code and the data directory from Data Dryad.

Examine paleoTS model selection performance with time series length

R package for average evolvability measures

A set of functions to plot BEAST outputs

R codes for simulating and detecting punctuated evolution in any clades, from dinosaurs to viruses

Exploring the genetic and behavioral factors behind the fertility-longevity trade-off, this project uses survival analysis and polygenic risk scores to uncover the complex interplay of reproductive behavior, socio-demographic influences, and genetic predispositions in shaping human lifespan.

An R interface to the PLAZA database for plant comparative genomics

R package for statistics of eigenvalue dispersion indices

My slides for my lecture on biodiversity, evolution and taxonomy for a short course for high school biology teachers, organised by the University of Cape Town's Schools Development Unit