Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.

Viral genome coverage evaluation for metagenomic diagnostics 🩸

VStrains is a de novo approach for reconstructing strains from viral quasispecies.

Detect iSNV and construct whole viral genomes from metagenomic samples

Viral (meta)-genome assembly pipeline.

Assembly and intrahost / low-frequency variant calling for viral samples

Set of tools for viral metagenomics.

Taxonomy classification of viral sequences / contigs

Viral genome assemble and characterisation

BEAR: viral diagnostic analysis pipeline for SARS-CoV-2

A streamlined Oxford Nanopore Viral Metagenomics Pipeline

Viral Metagenomics Assembly and Annotation Pipeline

Data portal and API for Center for Viral Systems Biology (CViSB) data

This repository contains the data and scripts used in Simulation Study of Viral Contiguous Sequence Identification Tools

This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.

This is a manual for viral metagenomic data analysis of Illumina short reads

Uses k-means prediction to ascertain genomic sequences within ambiguously attributed fasta format data. The resulting cluster sequences are used to develop NCBI BLAST requests.

Long-Read Viral Metagenome Assembly Benchmark (LoViMAB) is a pipeline made to compare metagenomic assemblies of viral nanopore reads.