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@drpatelh drpatelh commented Jan 24, 2020

Many thanks to contributing to nf-core/tools!

Please fill in the appropriate checklist below (delete whatever is not relevant). These are the most common things requested on pull requests (PRs).

PR checklist

  • This comment contains a description of changes (with reason)
  • If you've fixed a bug or added code that should be tested, add tests!
  • Documentation in docs is updated
  • CHANGELOG.md is updated
  • README.md is updated

Learn more about contributing: https://github.com/nf-core/tools/tree/master/.github/CONTRIBUTING.md

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@maxulysse maxulysse left a comment

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I have a couple of questions and some changes, but looks good

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@apeltzer apeltzer left a comment

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I think this is good to go! Monday release is better than fixing things on Friday alone ;-)

nextflow run {{ cookiecutter.name }} -profile test,<docker/singularity/conda/institute>
```

> Please check [nf-core/configs](https://github.com/nf-core/configs#documentation) to see if a custom config file to run nf-core pipelines already exists for your Institute. If so, you can simply use `-profile institute` in your command. This will enable either `docker` or `singularity` and set the appropriate execution settings for your local compute environment.
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It's here @drpatelh

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Yes, good point 👍 I wrote that 😅 but the explanation beforehand hopefully makes that clearer whereas we cant put that in the parameter section...

Maybe you can update both of those in the next release?

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@maxulysse maxulysse left a comment

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Apart this -profile institute that I think needs to be consistent, I'm OK with this PR

@drpatelh drpatelh merged commit 9e33e7f into master Jan 27, 2020
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9 participants