List view

Handle edge case for _are_coordinates_within_extraction_mask

bugSomething isn't workingSomething isn't working

Status: Merged (completed).

histolab/histolabnumber 308

#308 In histolab/histolab;

· by kheffah was closed on Aug 10, 2021

Finer control of locate_tiles

enhancementNew feature or requestNew feature or request

Status: Merged (completed).

histolab/histolabnumber 304

#304 In histolab/histolab;

· by kheffah was closed on Aug 12, 2021

Include histolab version in issue template

Status: Merged (completed).

histolab/histolabnumber 296

#296 In histolab/histolab;

· by alessiamarcolini was closed on Jul 21, 2021

Link automatically issues in PR template

Status: Merged (completed).

histolab/histolabnumber 291

#291 In histolab/histolab;

· by alessiamarcolini was closed on Jul 20, 2021

Update scipy requirement from <1.7.1,>=1.5.0 to >=1.5.0,<1.7.2

dependenciesPull requests that update a dependency filePull requests that update a dependency file

Status: Merged (completed).

histolab/histolabnumber 305

#305 In histolab/histolab;

· by dependabot was closed on Aug 2, 2021

Add RGB to OD filter

Status: Merged (completed).

histolab/histolabnumber 290

#290 In histolab/histolab;

· by alessiamarcolini was closed on Jul 21, 2021

Implement <code>TissueMask</code> mask for <code>Tile</code> with type dispatcher

enhancementNew feature or requestNew feature or request

ready-for-merge

Status: Merged (completed).

histolab/histolabnumber 313

#313 In histolab/histolab;

· by alessiamarcolini was closed on Aug 23, 2021

Add method dispatcher compatible with older Python versions

Status: Merged (completed).

histolab/histolabnumber 312

#312 In histolab/histolab;

· by alessiamarcolini was closed on Aug 18, 2021

Update numpy requirement from &lt;1.21.1,&gt;=1.18.4 to &gt;=1.18.4,&lt;1.21.2

dependenciesPull requests that update a dependency filePull requests that update a dependency file

Status: Merged (completed).

histolab/histolabnumber 286

#286 In histolab/histolab;

· by dependabot was closed on Jul 19, 2021

Pin pooch and be compliant with future versions

Status: Merged (completed).

histolab/histolabnumber 314

#314 In histolab/histolab;

· by alessiamarcolini was closed on Aug 23, 2021

Add security linter with Bandit in pre commit and CI

CI

Status: Merged (completed).

histolab/histolabnumber 316

#316 In histolab/histolab;

· by ernestoarbitrio was closed on Aug 30, 2021

Fix row-column/X-Y coordinates mix-up in Random Tiler

bugSomething isn't workingSomething isn't working

Status: Merged (completed).

histolab/histolabnumber 317

#317 In histolab/histolab;

· by alessiamarcolini was closed on Sep 5, 2021

add conversion level - magnification factor, when possible

enhancementNew feature or requestNew feature or request

Status: Merged (completed).

histolab/histolabnumber 319

#319 In histolab/histolab;

· by nicolebussola was closed on Sep 22, 2021

add cellularity score

Status: Merged (completed).

histolab/histolabnumber 320

#320 In histolab/histolab;

· by nicolebussola was closed on Sep 22, 2021

Fix docs links in tissue_mask

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Merged (completed).

histolab/histolabnumber 321

#321 In histolab/histolab;

· by alessiamarcolini was closed on Sep 21, 2021

Update numpy requirement from &lt;1.21.2,&gt;=1.18.4 to &gt;=1.18.4,&lt;1.21.3

dependenciesPull requests that update a dependency filePull requests that update a dependency file

Status: Merged (completed).

histolab/histolabnumber 310

#310 In histolab/histolab;

· by dependabot was closed on Aug 16, 2021

Update scikit-image requirement from &lt;0.18.0,&gt;=0.17.1 to &gt;=0.17.1,&lt;0.18.4

dependenciesPull requests that update a dependency filePull requests that update a dependency file

WIPwork in progresswork in progress

Status: Merged (completed).

histolab/histolabnumber 196

#196 In histolab/histolab;

· by dependabot was closed on Oct 8, 2021

change watershed test expectations according to skimage 0.18.1 changes

dependenciesPull requests that update a dependency filePull requests that update a dependency file

Status: Merged (completed).

histolab/histolabnumber 200

#200 In histolab/histolab;

· by ernestoarbitrio was closed on Oct 8, 2021

add warning in readme

Status: Merged (completed).

histolab/histolabnumber 325

#325 In histolab/histolab;

· by ernestoarbitrio was closed on Oct 5, 2021

Get rid of src directory in favor of <code>histolab</code> dir within the root

best practice

Status: Merged (completed).

histolab/histolabnumber 324

#324 In histolab/histolab;

· by ernestoarbitrio was closed on Oct 6, 2021

kmeans_segmentation is applied only to RGB images

bugSomething isn't workingSomething isn't working

Status: Merged (completed).

histolab/histolabnumber 328

#328 In histolab/histolab;

· by alessiamarcolini was closed on Oct 12, 2021

Support python39

enhancementNew feature or requestNew feature or request

Status: Merged (completed).

histolab/histolabnumber 332

#332 In histolab/histolab;

· by ernestoarbitrio was closed on Oct 15, 2021

Fix expectations after upgrade to skimage 0.18.3

Status: Merged (completed).

histolab/histolabnumber 327

#327 In histolab/histolab;

· by alessiamarcolini was closed on Oct 13, 2021

add note for data moudule

Status: Merged (completed).

histolab/histolabnumber 333

#333 In histolab/histolab;

· by ernestoarbitrio was closed on Oct 19, 2021

Conversion from RGB to HED preserves HED color space range

bugSomething isn't workingSomething isn't working

Status: Merged (completed).

histolab/histolabnumber 334

#334 In histolab/histolab;

· by alessiamarcolini was closed on Nov 3, 2021