What's Changed

• 657 bot updates scheduled by @jbousquin in #663
• Maintenance branch by @jbousquin in #664
• Module 2 and Module 3: New/edited functions and example workflows by @wokenny13 in #654
• update TADA_RandomTesting and TADA_ConvertDepthUnits test by @cristinamullin in #678
• bug fix - user supplied ref does not match any mls in TADA df by @hillarymarler in #679
• Maintenance branch by @jbousquin in #683
• 680 duplicate function tada aggregatemeasurements by @jbousquin in #687
• 682 redundant checks by @jbousquin in #689
• Air format suggestions on PR by @jbousquin in #688
• dependabot yaml by @jbousquin in #696
• Fix: Change format step to check mode and comment suggest by @jbousquin in #701
• Range flag update by @cristinamullin in #699
• Bump JamesIves/github-pages-deploy-action from 4.5.0 to 4.7.3 by @dependabot[bot] in #703
• Bump actions/upload-artifact from 4 to 5 by @dependabot[bot] in #705
• Bump actions/checkout from 4 to 5 by @dependabot[bot] in #702
• Maintenance branch by @cristinamullin in #707
• Vignette Re-ordering by @mhweber in #708
• Attains parameter to wqx characteristic alias table update and create the cst internal ref file by @wokenny13 in #698
• Update the CST ref table by @wokenny13 in #710
• Add format-suggest workflow for pull requests by @jbousquin in #709
• Updates to mod3 functions and vignettes by @wokenny13 in #713
• Bump JamesIves/github-pages-deploy-action from 4.7.3 to 4.7.4 by @dependabot[bot] in #719
• Bump actions/checkout from 5 to 6 by @dependabot[bot] in #718
• Batch air format workflow (and applied to existing code base) by @jbousquin in #721

New Contributors

• @dependabot[bot] made their first contribution in #703
• @mhweber made their first contribution in #708

Full Changelog: v1.0.3-beta...v1.0.4-beta

What's Changed

1. Updates to TADA_HarmonizeSynonyms and TADA_ConvertResultUnits by @hillarymarler in #619
2. New development and maintenance updates by @cristinamullin in #630

• Creates two new functions: TADA_CreateUseAURef and TADA_CreateWaterUseRef: #623
• Assigns ATTAINS Use Names to each AU in a user's WQP/TADA dataframe
• TADA_CreateWaterUseRef is a helper function to help assign ATTAINS Use to new/updated AUs
• New Module 2/Geospatial Workflow: #629 by @hillarymarler
• A functional draft of TADA_CreateAUMLRef
• An example Module 2 workflow (see vignette called ExampleMod2Workflow.rmd) by @hillarymarler
• Bug fixes & maintenance: #624
• Incorporate recent updates into vignettes
• Add tests to avoid NA result and unit issues in the future
• Update TN and TP harmonization and summation reference tables: #319
• Update TADA_ConvertSpecialChars clean = T option
• Remove TADA_AutoFilter and add functionality to TADA_RetainRequired
• Fix bug in TADA_ConvertSpecialChars where we were getting new columns with TADA.TADA.
• Fix bug in TADA_CalculateTotalNP where duplicate rows were being added when TP or TN already were in the dataset for a given day/location
• Add metadata to new rows created by TADA_CalculateTotalNP. Addresses issue: #588
• Adds curl as as dependency. Addresses: #627
• Updated TADA_AggregateMeasurements and TADA_RunKeyFlagFunctions
• Fixes NA bug in TADA_CalculateTotalNP and improve flags

3. Assign Use to Assessment Unit workflow in ExampleMod2 vignette by @wokenny13 in #645
4. Add new TADA_RenametoLegacy function and WQX 3.0 Migration vignette by @cristinamullin in #643
5. 632 leverage coverage in PR review by @jbousquin in #656

Full Changelog: v1.0.2-beta...v1.0.3-beta

What's Changed

• used stringr::str_wrap solution in figure functions by @hillarymarler in #595
• 590 change order of tada findnearbysites to increase efficiency by @hillarymarler in #592
• TADA workshop for cybertown by @cristinamullin in #597
• update vignette refs by @cristinamullin in #598
• fix readme poster png and update training by @cristinamullin in #599
• Cybertown training final edit by @cristinamullin in #600
• Create TADA_CreateCSV by @wokenny13 in #606
• fix data retrieval bug by @cristinamullin in #607
• Update autoFilter.R by @hillarymarler in #604
• Module 3 tada create param ref and tada create use param ref updates by @wokenny13 in #605
• Update Utilities.R by @hillarymarler in #610
• Updated QR code by @cefergus in #612
• Update README by @cristinamullin in #611
• Fix consolidated depth and depth flag bug by @hillarymarler in #618
• 613 tada autofilter should generate a flag column by @hillarymarler in #614

New Contributors

• @cefergus made their first contribution in #612

Full Changelog: v1.0.1-beta...v1.0.2-beta

What's Changed

• Package maintenance: A few maintenance and documentation improvements @cristinamullin in #580
• TADA_FieldCounts update: Updates "key" columns for filtering in TADA_FieldCounts and shiny app: https://github.com/USEPA/EPATADA/blob/develop/R/autoFilter.R#L51
• Test bug fix: Updates TADA_FlagContinuousData test to pass when random sample is all discrete by @hillarymarler in #582
• New features: Updates to ATTAINS fxns + new USGS continuous data fxns by @kathryn-willi in #589
• New training Rmd: R markdown that integrates other geospatial R packages with TADA @cristinamullin in #581 and #591
• Update: Improved Rmd that walks through how to crosswalk WQP Characteristic Names with Applicable ATTAINS State, Tribal or EPA 304(a) Parameter and Use Names: https://usepa.github.io/EPATADA/articles/TADAModule3_PartA.html

Full Changelog: v1.0.0-beta...v1.0.1-beta

What's Changed

• See all details in Mini Release PR: #578

What's Changed

• New vignette with New Mexico data for WaterSciCon workshop by @hillarymarler in #487
• Bug fix: TADA_ConvertResultUnits no longer overwrites TADA.MethodSpeciationName with NA by @hillarymarler in #486
• Minor vignette and example updates by @hillarymarler in #491
• Set up complex vignettes as articles by @hillarymarler in #496
• Nearby sites function updates by @renaemyers in #497
• Remove USGS speciation included in units by @hillarymarler in #493
• 467-add-an-all-others-category-to-tada_fieldvaluespie-when-there-are-many-categories by @wokenny13 in #498
• Articles update by @hillarymarler in #500
• Bug fix: USGS speciation no longer appears as part of units @hillarymarler in #503
• Use TADA Comparable Data Identifier for figure legend labels @wokenny13 in #490
• Continuous data flag efficiency updates by @hillarymarler in #501
• Update documentation for TADA_GetSynonymRef and TADA_HarmonizeSynonyms to remove any references to unit conversion by @hillarymarler in #510
• 504 consistent color pairs for outline fill for figures by @wokenny13 in #507
• Figures.r condensed code and tada view color palette to return a non null value by @wokenny13 in #511
• 513-occasional-test-failure-tada_findpotentialduplicates-does-not-grow-dataset by @wokenny13 in #514
• Update unit conversions by @cristinamullin in #516
• Bug fix: TADA_ConvertResultUnits no longer returns error when ref = "wqx" by @hillarymarler in #518
• Create function to find paired data for equation based criteria by @hillarymarler in #519
• geospatial function updates by @cristinamullin in #527
• Update to WQX ref (ft, in, m) and TADA (mass/mass to mass/volume) ref by @wokenny13 in #522
• Bug fix: Stop dataset from growing when converting result units or using autoclean by @hillarymarler in #535
• URL check test added by @hillarymarler in #537
• add water type + speed up fetchATTAINS(); {arcgislayers}-ify fetchNHD by @cristinamullin in #536
• Bug fix: only one value for min/max for each characteristic range check by @hillarymarler in #540
• Update URL check test and updated measure qualifier code ref by @hillarymarler in #541
• data retrieval updates by @cristinamullin in #542
• 515-flag-column-values-are-inconsistent-rejected-invalid-suspect-vs-accepted-valid-pass-1 by @wokenny13 in #532
• Code styling by @cristinamullin in #543
• Add validation table test and instructions identifying test failures by @hillarymarler in #545
• Update TADAModule1_AdvancedTraining.Rmd and fix MeasureQualifierCode bug by @cristinamullin in #548
• Added filter to exclude quality control samples from continuous data search by @hillarymarler in #549
• Fixes a few TADA Shiny app upload issues by @cristinamullin in #552
• Tada shiny flag tab bug fix by @cristinamullin in #553
• Update TADA_CheckRequiredFields and TADA_AutoClean by @cristinamullin in #557
• Update TADA_RandomTestingData to return a minimum of ten rows by @hillarymarler in #559
• Create function return Assessment Unit/Monitoring Location crosswalk by @hillarymarler in #562
• TADA_CreateParamRef() and TADA_CreateParamUseRef() by @wokenny13 in #555
• Updates by @cristinamullin in #565

New Contributors

• @wokenny13 made their first contribution in #498

Full Changelog: v0.1.0-alpha...v0.2.0-alpha

This is the first pre-release of EPATADA on GitHub. It is linked to the 6/14/24 deployment of the TADAShiny application in the Posit Connect staging environment (EPA internal access only: https://rstudio-connect.dmap-stage.aws.epa.gov/content/da3ffe2f-b443-4051-a029-3adb491434cb).

What's Changed

• EPA-develop by @cristinamullin in #1
• Created TADA_AutoClean.R by @jakegreif in #2
• Update DESCRIPTION by @mthawley in #4
• Updated AutoClean; added ProfileCheck function by @jakegreif in #3
• Documented functions by @jakegreif in #5
• Setting up test folder. by @mthawley in #6
• Added internal data, functions that use internal data by @jakegreif in #7
• 1st draft of 4 flag page functions by @jakegreif in #13
• Draft MediaNotWater function by @cristinamullin in #14
• Updated .R files; AggregatedContinuousData function by @jakegreif in #23
• Simply moving to independent for now by @cristinamullin in #24
• General function updates by @jakegreif in #25
• QAPP functions by @cristinamullin in #26
• Updated ResultValueSpecialCharacters function by @jakegreif in #27
• Completed WQX threshold functions by @jakegreif in #28
• Updated QAPP functions and created censored data function placeholder by @cristinamullin in #29
• DepthProfileData function by @jakegreif in #35
• Draft InvalidCoordinates function by @cristinamullin in #36
• updated invalid coords by @cristinamullin in #38
• Created WQXTargetUnits; added it to WQX threshold functions by @jakegreif in #39
• Updated Special char and WQX target unit functions by @jakegreif in #43
• minor changes by @cristinamullin in #45
• Completed HarmonizationRefTable by @jakegreif in #65
• Added readWQPWebService function, updated license and description by @cristinamullin in #68
• Completed HarmonizeData function by @jakegreif in #78
• Added vignettes and data retrieval functions by @cristinamullin in #77
• Small updates by @jakegreif in #80
• testing vignette by @cristinamullin in #81
• minor documentation edits by @cristinamullin in #82
• Polished documentation by @jakegreif in #84
• Updating vignette and minor edits to function defaults by @cristinamullin in #87
• A few updates by @jakegreif in #90
• minor tweaks by @cristinamullin in #89
• Small vignette updates by @jakegreif in #91
• Added filter functions by @jakegreif in #92
• Internal data updates by @jakegreif in #93
• updating testing vignette by @cristinamullin in #94
• Cm may23 by @cristinamullin in #96
• Cm may25 by @cristinamullin in #97
• More vignette updates by @cristinamullin in #99
• Cm 7 5 by @cristinamullin in #100
• I recommend using the tidyverse style guide by @zsmith27 in #103
• Cm july13 by @cristinamullin in #104
• Nondetects by @cristinamullin in #106
• cleaning up by @cristinamullin in #107
• Testthat by @mthawley in #108
• Aug3 cm by @cristinamullin in #109
• Aug11cm by @cristinamullin in #110
• Updated contributing.md by @cristinamullin in #111
• Removed duplicate license file by @cristinamullin in #112
• Cm develop by @cristinamullin in #114
• pkgdown updates by @cristinamullin in #115
• Rebuilt GH pages by @cristinamullin in #116
• readme updates by @cristinamullin in #117
• GitHub pages by @cristinamullin in #118
• Deleted dependency section by @zsmith27 in #119
• Censoreddata by @cristinamullin in #120
• ignore_attributes in readWQPdata by @ldecicco-USGS in #121
• Documentation by @cristinamullin in #122
• Cmullin sept21 by @cristinamullin in #123
• Lazy load newest ref tables (fixes #72) by @nx10 in #127
• removed donttest by @cristinamullin in #128
• Cm develop oct4 by @cristinamullin in #133
• Update readme.md by @jbousquin in #135
• Reduced install and load to bare minimum given dependencies in DESCRIPTION. by @jbousquin in #136
• Additional r file types to ignore by @jbousquin in #134
• DepthProfileData Fix issue #137 by @jbousquin in #138
• Cm troubleshooting by @cristinamullin in #139
• Depth profile data by @jbousquin in #141
• Testdata by @cristinamullin in #142
• Cm depth by @cristinamullin in #146
• Check functions by @jbousquin in #154
• Cm nov3 by @cristinamullin in #156
• Flagfunctions by @cristinamullin in #160
• 11142022cm by @cristinamullin in #161
• Cm12012022 by @cristinamullin in #166
• Retrievaledits cm by @cristinamullin in #168
• update staging by @cristinamullin in #169
• Vignettes proofreading kh by @katiehealy in #171
• InvalidFraction example by @cristinamullin in #172
• Added examples to completed functions by @katiehealy in #173
• small changes by @cristinamullin in #174
• Update ResultFlagsDependent.R by @katiehealy in #175
• option to change sign of lat/long outside USA by @katiehealy in #178
• update staging by @cristinamullin in #180
• Update develop by @cristinamullin in #181
• Invalidcoordinatesvignette kh by @katiehealy in #184
• Retrieval updates by @cristinamullin in #185
• Update DataDiscoveryRetrieval.R by @ehinman in #187
• TADAbigdataRet chunking by site by @ehinman in #193
• Vignette and map animation updates by @cristinamullin in #195
• Troubleshooting cm by @cristinamullin in #203
• Update flag functions kh by @katiehealy in #201
• automated workflows by @cristinamullin in #207
• formatting by @cristinamullin in #208
• InvalidResultUnit function update by @cristinamullin in #209
• InvalidResultUnit function update by @katiehealy in #206
• Inputs spec chars eh by @ehinman in #205
• Update issue templates by @cristinamullin in #216
• Censored data eh by @ehinman in #217
• Flag names, min-function, minor clean ups to tests, vignette by @ehinman in #219
• small documentation update by @cristinamullin in #220
• Cleanup eh by @ehinman in #223
• Censored data 2 eh by @ehinman in #224
• Flagging prep eh by @ehinman in #228
• Update ResultFlagsIndependent.R by @ehinman in #232
• HarmonizationTemplate.csv updates by @cristinamullin in #231
• Created TADA boxplot function by @katiehealy in #234
• edits to data retrieval by @ehinm...